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Conserved domains on  [gi|406655179|gb|AFS49945|]
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cytochrome b, partial (mitochondrion) [Mesoplodon hotaula]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-132 4.69e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 291.16  E-value: 4.69e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYV 132
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-132 4.69e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 291.16  E-value: 4.69e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYV 132
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-132 2.82e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.82e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 406655179  89 MFFICLYAHIGRGLYYGSYI--FQDTWNIGVILLFTVMATAFVGYV 132
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYV 126
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-132 4.04e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 157.93  E-value: 4.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 406655179   98 IGRGLYYG--SYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYV 117
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-132 2.38e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.48  E-value: 2.38e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 406655179  72 DVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAFVGYV 132
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYS 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-132 4.69e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 291.16  E-value: 4.69e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYV 132
CYTB MTH00131
cytochrome b; Provisional
 1-132 1.25e-92

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 272.30  E-value: 1.25e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYV 132
CYTB MTH00074
cytochrome b; Provisional
 1-132 1.50e-90

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 266.93  E-value: 1.50e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYV 133
CYTB MTH00119
cytochrome b; Provisional
 1-132 3.93e-90

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 266.00  E-value: 3.93e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYV 133
CYTB MTH00191
cytochrome b; Provisional
 4-132 4.52e-84

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 249.83  E-value: 4.52e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYV 129
CYTB MTH00034
cytochrome b; Validated
 4-132 3.86e-80

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 240.38  E-value: 3.86e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYV 132
CYTB MTH00145
cytochrome b; Provisional
 1-132 1.93e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 238.65  E-value: 1.93e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406655179  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYV 133
CYTB MTH00156
cytochrome b; Provisional
 11-132 2.28e-79

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 237.76  E-value: 2.28e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179  11 MKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 406655179  91 FICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYV 122
CYTB MTH00016
cytochrome b; Validated
 4-132 2.85e-75

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 228.02  E-value: 2.85e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYV 133
CYTB MTH00224
cytochrome b; Provisional
 4-132 6.06e-64

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 198.99  E-value: 6.06e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYV 133
CYTB MTH00022
cytochrome b; Validated
 4-132 2.21e-62

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 194.92  E-value: 2.21e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYV 131
CYTB MTH00053
cytochrome b; Provisional
 4-132 1.19e-60

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 190.69  E-value: 1.19e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYV 133
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-132 2.82e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.82e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 406655179  89 MFFICLYAHIGRGLYYGSYI--FQDTWNIGVILLFTVMATAFVGYV 132
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYV 126
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-132 4.04e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 157.93  E-value: 4.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 406655179   98 IGRGLYYG--SYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYV 117
CYTB MTH00033
cytochrome b; Provisional
 4-132 7.39e-48

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.79  E-value: 7.39e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   4 IRKTHPLMKIinNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406655179  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYV 129
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-132 2.38e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.48  E-value: 2.38e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179   1 MTNIRKTHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 406655179  72 DVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAFVGYV 132
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYS 143
CYTB MTH00086
cytochrome b; Provisional
 12-132 3.33e-37

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 129.29  E-value: 3.33e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179  12 KIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 406655179  92 ICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYV 121
CYTB MTH00046
cytochrome b; Validated
 10-132 7.62e-25

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 96.59  E-value: 7.62e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179  10 LMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 406655179  90 FFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAFVGYV 132
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYI 123
PRK03735 PRK03735
cytochrome b6; Provisional
 33-131 8.60e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.61  E-value: 8.60e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179  33 FGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYI--FQ 110
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90       100
                 ....*....|....*....|.
gi 406655179 111 DTWNIGVILLFTVMATAFVGY 131
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGY 144
petB CHL00070
cytochrome b6
 24-131 6.96e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 65.13  E-value: 6.96e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655179  24 PSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|
gi 406655179 104 YGSYI--FQDTWNIGVILLFTVMATAFVGY 131
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGY 136
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-132 1.01e-07

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 48.01  E-value: 1.01e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 406655179   88 SMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAFVGYV 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYS 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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