|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-186 |
8.59e-126 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 358.83 E-value: 8.59e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00119 150 LLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00119 230 LLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLH 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00119 310 TSKQRSMTFRPLSQLLFWTLVANLLI 335
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-186 |
2.21e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 176.90 E-value: 2.21e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLILIHLTFLHESGSNNPLGIS----SNCDKIPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPY 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 76 FSLKDLLGFTILLSLLTTLALFSPNllGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLIL 153
Cdd:COG1290 240 YTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVL 317
|
170 180 190
....*....|....*....|....*....|...
gi 407259335 154 FTCPLLHKSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:COG1290 318 FLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-184 |
8.36e-45 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 145.10 E-value: 8.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 59 NPLGISSNCDKIPFHPYFSLKDLLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 407259335 139 KLGGVLALAASVLILFTCPLLHKSKQRTMaFRPISQLLFWTLAANL 184
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGT 125
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
110-186 |
8.47e-35 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 117.96 E-value: 8.47e-35
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHKSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVV 77
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
110-177 |
3.83e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.96 E-value: 3.83e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHKSKQRTMAF-RPISQLLF 177
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-186 |
8.59e-126 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 358.83 E-value: 8.59e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00119 150 LLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00119 230 LLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLH 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00119 310 TSKQRSMTFRPLSQLLFWTLVANLLI 335
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-186 |
2.95e-111 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 321.97 E-value: 2.95e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00100 149 LLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKD 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00100 229 ILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLH 308
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00100 309 TSKQRSMMFRPLSQCLFWLLVADLLT 334
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-186 |
4.78e-110 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 318.91 E-value: 4.78e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00131 149 LLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKD 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00131 229 LLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILH 308
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00131 309 TSKQRGLTFRPLTQFLFWTLVADVLI 334
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-186 |
2.89e-105 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 306.99 E-value: 2.89e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00074 150 LLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00074 230 LLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLH 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00074 310 TSKQRSLMFRPLTQILFWLLVANTLI 335
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-186 |
3.40e-105 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 306.07 E-value: 3.40e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00191 146 LLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKD 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00191 226 ILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLH 305
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00191 306 TSKQRSNTFRPLTQVVFWLWVANFIL 331
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-186 |
1.07e-104 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 304.40 E-value: 1.07e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTN 298
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00156 299 KSKFRGNQFYPINKILFWIFVNIVIL 324
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-186 |
3.14e-101 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 296.43 E-value: 3.14e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00145 150 LLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00145 230 LVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLH 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00145 310 VGKFRSLSFYPLNQVLFWIFVGNFFI 335
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-184 |
4.47e-95 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 280.80 E-value: 4.47e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00016 150 LLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00016 230 IVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIF 309
|
170 180
....*....|....*....|....
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANL 184
Cdd:MTH00016 310 KQKFRGLSFYPLNQILFWLLVSNF 333
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-186 |
3.37e-93 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 276.20 E-value: 3.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00034 149 LVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKD 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00034 229 LVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILH 308
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00034 309 TSNNQSSTFRPLSQIAFWLLIATFFI 334
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-186 |
2.47e-82 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 248.47 E-value: 2.47e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00053 150 LLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00053 230 LYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLH 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00053 310 KSRFRGLSFRPLSKILFWFLVGDFFL 335
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-186 |
2.75e-80 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 243.07 E-value: 2.75e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00022 148 LLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKD 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00022 228 WYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLH 307
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00022 308 TSWLRGLTFRPLGRMAFWFLIVDFIL 333
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-186 |
3.40e-78 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 237.90 E-value: 3.40e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00224 150 LFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLH 160
Cdd:MTH00224 230 ALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTS 309
|
170 180
....*....|....*....|....*.
gi 407259335 161 KSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00224 310 VMNKRSLPFYPLNQLLFWLLVTSWAI 335
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-186 |
4.30e-61 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 194.39 E-value: 4.30e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00033 146 LVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 81 LLGFTILLSLLTTLALFS--PNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPL 158
Cdd:MTH00033 226 ILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPI 305
|
170 180
....*....|....*....|....*...
gi 407259335 159 LHKSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:MTH00033 306 LDRSKIRSLTFNPTGKFFFWFIVGDFII 333
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-186 |
2.21e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 176.90 E-value: 2.21e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLILIHLTFLHESGSNNPLGIS----SNCDKIPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPY 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 76 FSLKDLLGFTILLSLLTTLALFSPNllGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLIL 153
Cdd:COG1290 240 YTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVL 317
|
170 180 190
....*....|....*....|....*....|...
gi 407259335 154 FTCPLLHKSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:COG1290 318 FLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-154 |
4.58e-52 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 170.12 E-value: 4.58e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKD 80
Cdd:MTH00086 138 LLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 407259335 81 LLGFtILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILF 154
Cdd:MTH00086 218 AYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFY 290
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-184 |
8.36e-45 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 145.10 E-value: 8.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 59 NPLGISSNCDKIPFHPYFSLKDLLGFTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 407259335 139 KLGGVLALAASVLILFTCPLLHKSKQRTMaFRPISQLLFWTLAANL 184
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGT 125
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
5-186 |
6.20e-41 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 141.27 E-value: 6.20e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 5 IPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSNNPLGISSN-CDKIPFHPYFSLKDLLG 83
Cdd:MTH00046 144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 84 FTILLSLLTTLALFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILFTCPLLHKSK 163
Cdd:MTH00046 224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS 302
|
170 180
....*....|....*....|...
gi 407259335 164 qrtmAFRPISQLLFWtLAANLFI 186
Cdd:MTH00046 303 ----VYSVWRQVNFW-LIVSLFF 320
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
110-186 |
8.47e-35 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 117.96 E-value: 8.47e-35
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHKSKQRTMAFRPISQLLFWTLAANLFI 186
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVV 77
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-58 |
1.00e-22 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 90.12 E-value: 1.00e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESGSN 58
Cdd:cd00284 143 LFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
1.02e-20 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 83.83 E-value: 1.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHF-LLPFMITSLILIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 407259335 80 DLLGFTILLSLLTTLALFSPNLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-56 |
4.88e-18 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 77.42 E-value: 4.88e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 407259335 1 LFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLILIHLTFLHESG 56
Cdd:pfam00033 134 LLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
110-177 |
2.55e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 61.56 E-value: 2.55e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHK-SKQRTMAFRPISQLLF 177
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
110-177 |
3.83e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.96 E-value: 3.83e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHKSKQRTMAF-RPISQLLF 177
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
110-177 |
1.12e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 54.41 E-value: 1.12e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259335 110 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFTCPLLHKSKQRTMAF-RPISQLLF 177
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF 134
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-61 |
2.32e-08 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 51.65 E-value: 2.32e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 407259335 4 AIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLILIHLTFLHESGSNNPL 61
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-61 |
7.15e-08 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 50.48 E-value: 7.15e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259335 3 SAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLILIHLTFLHESGSNNPL 61
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|