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Conserved domains on  [gi|407259455|gb|AFT91354|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Prioniturus verticalis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-243 2.42e-110

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 321.00  E-value: 2.42e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00112 293 YLR 295
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-243 2.42e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 321.00  E-value: 2.42e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00112 293 YLR 295
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-243 7.21e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 87.86  E-value: 7.21e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLF-SSMINAwFTGQWDITQL--------TYPP----SCTLLTTAIAIKLGLTPFHFWFPEVL 67
Cdd:COG1007  152 SEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaaalaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVY 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  68 QGSSLPTALLLSTVMKL----PPTSILLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:COG1007  231 EGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLL 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 141 IIIYNPKLTL--LTFY--IYILMTTSIFLTM-----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:COG1007  311 GLAAGTPLGVsaALFYllAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390

                        250       260       270
                 ....*....|....*....|....*....|..
gi 407259455 212 WLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:COG1007  391 FYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 2.07e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 84.67  E-value: 2.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455    1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCT-----------LLTTAIAIKLGLTPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   70 SSLP-TALLLSTVMKLPPTSILLLTS--HSLNPT---LLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  143 ---IYNPKLTLLTFYIYILMTTSIFL--------TMNTTNTLKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268

                         250       260
                  ....*....|....*....|...
gi 407259455  212 WLIIQELTKQNMTTAATTISMLS 234
Cdd:pfam00361 269 FLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-243 5.65e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 5.65e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455    1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQL-----TYPPSCTLLT-------TAIAIKLGLTPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLllflsNGMLNISLLLlgivlilVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   69 GSSLPTALLLSTVMKLPPTSILL-------LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTII 141
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  142 IIYNPKLTL--LTFY--IYILMTTSIFLTM------NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:TIGR01770 312 LLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGK 391

                         250       260       270
                  ....*....|....*....|....*....|..
gi 407259455  212 WLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-243 2.42e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 321.00  E-value: 2.42e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00112 293 YLR 295
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-243 7.24e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 276.42  E-value: 7.24e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00070  53 TEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00070 133 WQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00070 213 SSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00070 293 YLR 295
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-243 1.80e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 272.83  E-value: 1.80e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00135  53 VEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTsILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00135 133 WQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMT 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00135 212 SSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYF 291


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00135 292 YLR 294
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-243 1.59e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 257.85  E-value: 1.59e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00105  53 TEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00105 133 WQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00105 213 LTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00105 293 YMR 295
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-243 7.31e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 202.51  E-value: 7.31e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00200  53 VEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00200 133 WQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIIT 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00200 213 LTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00200 293 YLR 295
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-243 7.51e-64

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 202.47  E-value: 7.51e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00041  53 VEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIAT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00041 133 WQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIIN 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00041 213 TSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFF 292


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00041 293 YLR 295
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-243 1.06e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 144.97  E-value: 1.06e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGqwditqLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00160  54 SESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMT 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPtsiLLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00160 128 WQKIAP---LILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIIS 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00160 205 LSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYF 284


                 ...
gi 407259455 241 YLR 243
Cdd:MTH00160 285 YLR 287
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-242 1.72e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 128.47  E-value: 1.72e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITqltyppscTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00144  53 SESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPtsILLLTSHSLNPTLLTT---MSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYI 157
Cdd:MTH00144 125 WQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 158 LMTTSIFLTMNTTNTLKLSTlMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLA 237
Cdd:MTH00144 203 VSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLIS 281


                 ....*
gi 407259455 238 LFFYL 242
Cdd:MTH00144 282 LFFYL 286
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-242 1.32e-34

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 126.05  E-value: 1.32e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSminawfTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLST 80
Cdd:MTH00011  55 SEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILST 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  81 VMKLPPTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMT 160
Cdd:MTH00011 129 WQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIIT 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 161 TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:MTH00011 209 TPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFY 288


                 ..
gi 407259455 241 YL 242
Cdd:MTH00011 289 YL 290
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 2-243 2.89e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 112.07  E-value: 2.89e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFSSMinAWFTGQWditqlTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLSTV 81
Cdd:MTH00197  48 EGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATW 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  82 MKLPPtsILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYILMTT 161
Cdd:MTH00197 121 QKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMF 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 162 SIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFFY 241
Cdd:MTH00197 199 MLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYY 278


                 ..
gi 407259455 242 LR 243
Cdd:MTH00197 279 LS 280
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 2-243 1.28e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 94.71  E-value: 1.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFS-------------SMINAWFTGQWDITQLTYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQ 68
Cdd:MTH00196  44 EAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  69 GSSLPTALLLSTVMKLPPTSILLltSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII----IY 144
Cdd:MTH00196 124 GAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFE 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 145 NPKLTLLTFYIYILMTTSIFLTMNTTNTLK--LSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQN 222
Cdd:MTH00196 202 SIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281

                        250       260
                 ....*....|....*....|.
gi 407259455 223 MTTAATTISMLSLLALFFYLR 243
Cdd:MTH00196 282 YYLIFLLAVFCSVIAGVYYVR 302
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-243 7.21e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 87.86  E-value: 7.21e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLF-SSMINAwFTGQWDITQL--------TYPP----SCTLLTTAIAIKLGLTPFHFWFPEVL 67
Cdd:COG1007  152 SEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaaalaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVY 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  68 QGSSLPTALLLSTVMKL----PPTSILLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:COG1007  231 EGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLL 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 141 IIIYNPKLTL--LTFY--IYILMTTSIFLTM-----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:COG1007  311 GLAAGTPLGVsaALFYllAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390

                        250       260       270
                 ....*....|....*....|....*....|..
gi 407259455 212 WLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:COG1007  391 FYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 2.07e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 84.67  E-value: 2.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455    1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSCT-----------LLTTAIAIKLGLTPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   70 SSLP-TALLLSTVMKLPPTSILLLTS--HSLNPT---LLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  143 ---IYNPKLTLLTFYIYILMTTSIFL--------TMNTTNTLKLSTLmtsWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268

                         250       260
                  ....*....|....*....|...
gi 407259455  212 WLIIQELTKQNMTTAATTISMLS 234
Cdd:pfam00361 269 FLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-243 9.35e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.49  E-value: 9.35e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLF-SSMINAwFTGQWDITQL--------TYPP----SCTLLTTAIAIKLGLTPFHFWFPEVL 67
Cdd:PRK05777 153 LEAAIKYFVLGALASGFLLYgMSLLYG-ATGSLSFAGIakaladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVY 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  68 QGSSLPTALLLSTVMKL----PPTSILLLTSHSLNPT---LLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:PRK05777 232 EGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 141 IIIYNPKLTL--LTFY--IYILMTTSIF--LTMNTTNTLKLSTLmTSWT----KTPMLNTTLMLTLLSLAGLPPLTGFLP 210
Cdd:PRK05777 312 GLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWG 390

                        250       260       270
                 ....*....|....*....|....*....|...
gi 407259455 211 KWLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:PRK05777 391 KFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-243 5.65e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 5.65e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455    1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQL-----TYPPSCTLLT-------TAIAIKLGLTPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLllflsNGMLNISLLLlgivlilVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   69 GSSLPTALLLSTVMKLPPTSILL-------LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTII 141
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  142 IIYNPKLTL--LTFY--IYILMTTSIFLTM------NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:TIGR01770 312 LLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGK 391

                         250       260       270
                  ....*....|....*....|....*....|..
gi 407259455  212 WLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-215 6.83e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 81.99  E-value: 6.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   1 TEAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTYPPSC----TLLTTAIAIKLGLTPFHFWFPEVLQGSSLPTAL 76
Cdd:MTH00199 147 TEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTA 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  77 LLSTVMKLPPTSILLLTSHSLNPTLLTtmSIMSIALGGWMGLNQTQTRKIMAF**ISHLGW----MTIIIIYNPKLTLLT 152
Cdd:MTH00199 227 LLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIY 304

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259455 153 FYIYILMTT---SIFLTMNTTNTLKLSTLMTSwTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLII 215
Cdd:MTH00199 305 MIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-243 4.95e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.86  E-value: 4.95e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQL-----TYPPS-----CTLLTTAIAIKLGLTPFHFWFPEVLQGSS 71
Cdd:COG0651  157 RAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYPAAP 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  72 LPTALLLSTVM-KLPPTSILLLTSHSLNP-------TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII- 142
Cdd:COG0651  237 SPVSALLSGLLtKVGVYAILRVLTLLFGAdpalflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLg 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 143 IYNPKLTLLTFYIYI---LMTTSIFLT----MNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLII 215
Cdd:COG0651  317 LGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLL 396

                        250       260
                 ....*....|....*....|....*...
gi 407259455 216 QELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:COG0651  397 QAALEAGAWLLAAVLLLSSLLTLAYFVR 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 45-243 6.35e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.58  E-value: 6.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  45 LLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLSTVMKLppTSILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTR 124
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 125 KIMAF**ISHLGWMTIII---IYNPKLTLLTFYIYILMTTSIFLTM----------------------NTTNTLKLSTLM 179
Cdd:MTH00198 382 RLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALASFTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLT 461

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 407259455 180 TSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLAL-------FFYLR 243
Cdd:MTH00198 462 ILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFAIictcisaFYYIR 532
ndhB CHL00049
NADH dehydrogenase subunit 2
 2-211 3.99e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 59.25  E-value: 3.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFS-SMINAWFTGQWDI---------TQLTYPPSC----TLLTTAIAIKLGLTPFHFWFPEVL 67
Cdd:CHL00049 162 EATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTPDVY 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  68 QGSSLPTALLLSTVMKLP----PTSILLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:CHL00049 242 EGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVII 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 141 III-------YNPKLTLLTFYIYILMTT--SIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:CHL00049 322 GIIvgdsndgYASMITYMLFYIFMNLGTfaCIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 45-243 3.30e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 53.34  E-value: 3.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  45 LLTTAIAIKLGLTPFHFWFPEVLQGSSLPTALLLS-TVMKLPPTSILLLTSHSLNP---------TLLTTMSIMSIALGG 114
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGS 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 115 WMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLL--TFYI--YILMTTSIFLT----MNTTNTLKLSTLMTSWTKTP 186
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMP 366

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 407259455 187 MLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLR 423
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-140 1.01e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 52.01  E-value: 1.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   3 AAIKYFLTQAAASTLVLFSSMINAWFTGQW-----DITQLTYPPS-----CTLLTTAIAIKLGLTPFHFWFPEVLQGSSL 72
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDAHVEAPT 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259455  73 PTALLLSTVMK-----------LPptsILLLTSHSLNPTLLtTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:COG1008  242 AGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
2-211 4.36e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.05  E-value: 4.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLF-SSMINAWFTGQWDIT----QLTYPPSCTLLTT------AIAIKLGLTPFHFWFPEVLQGS 70
Cdd:PRK02504 161 EAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDVYEGS 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  71 SLPTALLLSTVMKLPPTSI---LLLTSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIII 143
Cdd:PRK02504 241 PTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLV 320

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259455 144 YNPK--LTLLTFY--IYILMT----TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK02504 321 AGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 3-236 1.42e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455    3 AAIKYFLTQAAASTLVLfSSMINAWFTGQW-----DITQLTYPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSSL 72
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLML-LAILGLYFLGGGtfdllELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAHVEAPT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   73 PTALLLSTVM-KLPPTSILLL-------TSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIY 144
Cdd:TIGR01972 236 AGSVILAGVLlKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFS 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  145 NPKLTLLTFYIYI----LMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 216
Cdd:TIGR01972 315 FNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394

                         250       260
                  ....*....|....*....|
gi 407259455  217 ELTKQNMTTAAttISMLSLL 236
Cdd:TIGR01972 395 GSFKVNPVVAF--LAALGIV 412
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-214 4.67e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.01  E-value: 4.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFSSminAWFTGQWDITQLTY-------PPSCT------LLTTAIAIKLGLTPFHFWFPEVLQ 68
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmseNPTVVakialaLFIAGLAMKSGAVPVHMWLPDAYP 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  69 G--SSLPTALLLSTVMKLPPTSILLLTSHSLNPTLLTTMSIMSI------ALGGWMGLNQTQTRKIMAF**ISHLGWMTI 140
Cdd:PRK08376 249 AapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAVVQKDVKRLLAYHSVSQIGYMLL 328

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 141 ---IIIYNPKLTLLTFYIYILMTTSIFLTMN-----------------TTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLA 200
Cdd:PRK08376 329 glgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNELGGLARTMPKTTIAFLIGAAAIV 408

                        250
                 ....*....|....
gi 407259455 201 GLPPLTGFLPKWLI 214
Cdd:PRK08376 409 GLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-223 6.71e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.45  E-value: 6.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQ----LTYPPS------CTLLTTAIAI-KLGLTPFHFWFPE----- 65
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfaliVFLFLLAFGVaKAGIFPLHVWAPDaysea 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  66 ------VLQG--SSLPTALLLSTVMKLPPTSILL----LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**IS 133
Cdd:PRK08668 227 pqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 134 HLGWMTIIIIYNPKLTLL--TFYI--YILMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPL 205
Cdd:PRK08668 307 NGGYILVGLGLGTSLGFAggLFHVfnHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPM 386

                        250
                 ....*....|....*...
gi 407259455 206 TGFLPKWLIIQELTKQNM 223
Cdd:PRK08668 387 SGFASKWLIFEALISKGM 404
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 45-216 7.29e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.42  E-value: 7.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  45 LLTTAIAIKLGLTPFHFWFPEvlqgsSLPTALLLST-----------VMKLPPTSILLLTSHSLNpTLLTTMSIMSIALG 113
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVG 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 114 GWMGLNQTQTRKIMAF**ISHLGWMTI-IIIYNPK-LTLLTFYI--YILMTTSIFLTMN-------TTNTLKLSTLMTSw 182
Cdd:PRK12665 288 ILGAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVAgLSGAIYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA- 366

                        170       180       190
                 ....*....|....*....|....*....|....
gi 407259455 183 tkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 216
Cdd:PRK12665 367 --SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 55-220 2.65e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 2.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  55 GLTPFHFWFPEVLQGSSLPTALLLSTV-MKLPPTSILLLTSHSLNPTL-----LTTMSIMSIALGGWMGLNQTQTRKIMA 128
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 129 F**ISHLG--------WMTIIIIYNPKLTLLTFY--IYILMTTSIFLTM---------NTTNTLKLSTLMTSWTKTPMLN 189
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|.
gi 407259455 190 TTLMLTLLSLAGLPPLTGFLPKWLIIQELTK 220
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-142 5.01e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.79  E-value: 5.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   3 AAIKYFLTQAAASTLVLFSSMINAWFTGQ--WDITQLT---YPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSSL 72
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259455  73 PTALLLSTV-MKLPPTSI------LLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII 142
Cdd:PRK12561 218 PVSMILAGVlLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12650 PRK12650
DUF4040 family protein;
44-211 5.72e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 5.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  44 TLLTTAIAIKLGLT--------PFHFWFPEVLQGSSLPTALLLSTVMKLPPTSILLLTS--HSLNPT---LLTTMSIMSI 110
Cdd:PRK12650 204 PGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITA 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 111 ALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYI----LMTTSIFLTM----NTTNTLKLSTLMTSW 182
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLW 363

                        170       180
                 ....*....|....*....|....*....
gi 407259455 183 TKTPMLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK12650 364 RRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-138 8.43e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.07  E-value: 8.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   3 AAIKYFLTQAAASTLVLFSSMINAWFTG--QWDITQL---TYPPSCTLLTTA-----IAIKLGLTPFHFWFPEVLQGSSL 72
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259455  73 PTALLLSTVMKLPPTSILLLTSHSLNPTL-------LTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWM 138
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 58-218 1.58e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 39.37  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  58 PFHFWFPEVLQGsslPT---ALLLSTVM---------KLPPtsILLLTSHSLnpTLLTTMSIMSIALGGWMGLNQTQTRK 125
Cdd:COG1009  229 PLHFWLPDAMEG---PTpvsALLHAATMvkagvyllaRLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKR 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 126 IMAF**ISHLGWMTIIIiynpKLTLLTFYIYILMTTSIF------------LTMNTTNTLKLSTLmtsWTKTPMLNTTLM 193
Cdd:COG1009  302 VLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFL 374

                        170       180
                 ....*....|....*....|....*
gi 407259455 194 LTLLSLAGLPPLTGFLPKWLIIQEL 218
Cdd:COG1009  375 IGALSLAGIPPFAGFFSKEAILEAA 399
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-240 1.67e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.33  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 100 TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIIIIYNPKLTLLTFYIYI----LMTTSIFLTMNTT----N 171
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfG 359

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 407259455 172 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQNMTTAATTISMLSLLALFF 240
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 3-142 1.68e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   3 AAIKYFLTQAAASTLVLFSSMINAWF----TGQWDITQLTYPPSCTLLTT--------AIAIKLGLTPFHFWFPEVLQGS 70
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPDAHVQA 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  71 SLPTALLLSTVM-----------KLPptsILLLTSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMT 139
Cdd:PRK05846 242 PTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317


                 ...
gi 407259455 140 III 142
Cdd:PRK05846 318 LGI 320
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 58-214 2.15e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.13  E-value: 2.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  58 PFHFWFPEVLQGSSLPTALLLSTVM-KLpptSILLLTShsLNP---------TLLTTMSIMSIALGGWMGLNQTQTRKIM 127
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMvKA---GIYLLAR--LNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLIL 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 128 AF**ISHLGWMTIIIIYNPKLTLLTFYIYI----LMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTTLMLTLLSL 199
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSM 367

                        170
                 ....*....|....*
gi 407259455 200 AGLPPLTGFLPKWLI 214
Cdd:PRK12647 368 AGLPPLFGFLAKELI 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
2-243 2.91e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455   2 EAAIKYFLTQAAASTLVLFSSMINAWFTGQWDITQLTY-----PPSCTLLTTAIAIKLG------LTPFHFWFPEVLQGS 70
Cdd:PRK06277 150 KAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGllygsgLPPFHTIKSDIYAKA 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  71 SLPTALLLSTVMKLPPTSILL--------LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTIII 142
Cdd:PRK06277 230 KPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 143 IYNPKLT----LLTFYIYILMTTSIFL----TMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 214
Cdd:PRK06277 310 ALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                        250       260
                 ....*....|....*....|....*....
gi 407259455 215 IQELTKQNMTTAATTISMLSLLALFFYLR 243
Cdd:PRK06277 390 AQAAMQANMPELAIIMIIVSIGTFVSMMK 418
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
100-241 5.02e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 37.62  E-value: 5.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455 100 TLLTTMSIMSIALGGWMGLNQTQTRKIMAF**ISHLGWMTI-IIIYNPK-LTLLTFY---IYILMTTSIFLT---MNTTN 171
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTG 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259455 172 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ-ELTKQNMTTAATT-----ISMLSLLALFFY 241
Cdd:PRK12663 353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMlitslITMYSLFRIFFL 428
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 49-163 9.00e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 36.82  E-value: 9.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259455  49 AIAIKLGLTPFHFWFPEV-LQGSSLPTALLLSTVMKLPPTS-------ILLLTSHSLNPTLLtTMSIMSIALGGWMGLNQ 120
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGlvrlswpILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 407259455 121 TQTRKIMAF**ISHLGWMTIIIIYNpKLTLLTFYIYILMTTSI 163
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGI 359
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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