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Conserved domains on  [gi|407259477|gb|AFT91365|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Psittinus cyanurus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-237 1.43e-102

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 300.97  E-value: 1.43e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLS 289
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-237 1.43e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 300.97  E-value: 1.43e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLS 289
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 1.35e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.36  E-value: 1.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477    1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN-----------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   70 SSLT-TALLLSTMMKLPPTSILLLTS--HSLNPT---LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  143 ---IYNPKLTLLTFYIYVLMTASIFL--------TMNTTNTLKLPTLmtsWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 407259477  212 WSIIQ 216
Cdd:pfam00361 269 FLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-218 2.39e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 71.30  E-value: 2.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLL-SSMTNAwSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:COG1007  153 EAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYE 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  69 GSSLTTALLLST---------MMKLpptsiLLLTSHSLNP---TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMG 136
Cdd:COG1007  232 GAPTPVTAFLATapkiaafaaLLRL-----LVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 137 WMTIIIIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLPTLMTS-----WTKAPTLNTTLMLTLLSLAGLPPLTG 207
Cdd:COG1007  307 YLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAG 386

                        250
                 ....*....|.
gi 407259477 208 FLPKWSIIQEL 218
Cdd:COG1007  387 FFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-237 1.58e-12

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 66.12  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477    1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   69 GSSLTTALLLSTMMKLPPTSILL-------LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTII 141
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  142 IIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLP-----TLMTSWTK-APTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:TIGR01770 312 LLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKtNPILAILILIFMFSLAGIPPLAGFFGK 391

                         250       260
                  ....*....|....*....|....*.
gi 407259477  212 WSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIG 417
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-237 1.43e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 300.97  E-value: 1.43e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLS 289
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-236 1.40e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 265.51  E-value: 1.40e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00135  53 VEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTsILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00135 133 WQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMT 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00135 212 SSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALL 287
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-236 1.72e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 254.85  E-value: 1.72e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00070  53 TEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00070 133 WQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00070 213 SSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALL 288
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-236 1.99e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 239.36  E-value: 1.99e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00105  53 TEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00105 133 WQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00105 213 LTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-236 2.30e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 198.27  E-value: 2.30e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00200  53 VEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00200 133 WQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIIT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00200 213 LTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLL 288
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-215 4.66e-60

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 192.45  E-value: 4.66e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00041  53 VEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIAT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00041 133 WQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIIN 212

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00041 213 TSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-236 2.89e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 133.02  E-value: 2.89e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLLSSMTNAWSTGqwditqLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTM 81
Cdd:MTH00160  55 ESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTW 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  82 MKLPPtsiLLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMTA 161
Cdd:MTH00160 129 QKIAP---LILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISL 205

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 162 SIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATTISMLSLL 236
Cdd:MTH00160 206 SIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLI 280
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-223 6.14e-31

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 116.42  E-value: 6.14e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSmtnawsTGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00011  55 SEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILST 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00011 129 WQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIIT 208

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00011 209 TPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-223 9.47e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 113.06  E-value: 9.47e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITqltyplscNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00144  53 SESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPtsILLLTSHSLNPTLLTTL---SIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV 157
Cdd:MTH00144 125 WQKVAP--LFLLSNFLDLYWLAYLLcviSVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI 202

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 158 LMTASIFLTMNTTNTlKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00144 203 VSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-218 4.04e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 111.30  E-value: 4.04e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTgqwditqLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00197  47 NEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLAT 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  81 MMKLPPtsILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVLMT 160
Cdd:MTH00197 120 WQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIM 197

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 407259477 161 ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:MTH00197 198 FMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 2-215 2.76e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 90.86  E-value: 2.76e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDI-------------TQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:MTH00196  44 EAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  69 GSSLTTALLLSTMMKLPPTSILLltSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII----IY 144
Cdd:MTH00196 124 GAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFE 201

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477 145 NPKLTLLTFYIYVLMTASIFLTMNTTNTLK--LPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00196 202 SIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 1.35e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.36  E-value: 1.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477    1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN-----------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   70 SSLT-TALLLSTMMKLPPTSILLLTS--HSLNPT---LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  143 ---IYNPKLTLLTFYIYVLMTASIFL--------TMNTTNTLKLPTLmtsWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 407259477  212 WSIIQ 216
Cdd:pfam00361 269 FLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-215 1.78e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 83.53  E-value: 1.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALL 77
Cdd:MTH00199 148 EAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGDvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTAL 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  78 LSTMMKLPPTSILLLTSHSLNPTLLTtlSIMSIALGGWMGLNQTQTRKILAF**ISHMGW----MTIIIIYNPKLTLLTF 153
Cdd:MTH00199 228 LATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYM 305

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 407259477 154 YIYVLMTA---SIFLTMNTTNTLKLPTLMTSwTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00199 306 IIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-218 2.39e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 71.30  E-value: 2.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLL-SSMTNAwSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:COG1007  153 EAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYE 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  69 GSSLTTALLLST---------MMKLpptsiLLLTSHSLNP---TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMG 136
Cdd:COG1007  232 GAPTPVTAFLATapkiaafaaLLRL-----LVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 137 WMTIIIIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLPTLMTS-----WTKAPTLNTTLMLTLLSLAGLPPLTG 207
Cdd:COG1007  307 YLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAG 386

                        250
                 ....*....|.
gi 407259477 208 FLPKWSIIQEL 218
Cdd:COG1007  387 FFGKFYVFSAA 397
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-227 1.31e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 66.38  E-value: 1.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:PRK05777 154 EAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEG 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  70 SSLTTALLLSTMMKL----PPTSILLLTSHSLNPT---LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII 142
Cdd:PRK05777 234 APTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGL 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 143 IYNPKLTL--LTFY--IYVLMTASIF--LTMNTTNTLKLPTLmTSWT----KAPTLNTTLMLTLLSLAGLPPLTGFLPKW 212
Cdd:PRK05777 314 AAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKF 392

                        250
                 ....*....|....*
gi 407259477 213 SIIQELTKQEMTTTA 227
Cdd:PRK05777 393 YVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-237 1.58e-12

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 66.12  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477    1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   69 GSSLTTALLLSTMMKLPPTSILL-------LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTII 141
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  142 IIYNPKLTL--LTFY--IYVLMTASIFLTMNTTNTLKLP-----TLMTSWTK-APTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:TIGR01770 312 LLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKtNPILAILILIFMFSLAGIPPLAGFFGK 391

                         250       260
                  ....*....|....*....|....*.
gi 407259477  212 WSIIQELTKQEMTTTATTISMLSLLG 237
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIG 417
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 45-215 3.46e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 65.27  E-value: 3.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  45 LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTMMKLppTSILLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTR 124
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 125 KILAF**ISHMGWMTIII---IYNPKLTLLTFYIYVLMTASIFLTM----------------------NTTNTLKLPTLM 179
Cdd:MTH00198 382 RLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALASFTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLT 461

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 407259477 180 TSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00198 462 ILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-236 4.89e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 64.78  E-value: 4.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG0651  156 LRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYpAA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  70 SSLTTALLLSTMMKLPPTSILLLTSHSLNP-------TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIII 142
Cdd:COG0651  236 PSPVSALLSGLLTKVGVYAILRVLTLLFGAdpalflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 143 -IYNPKLTLLTFYIYV---LMTASIFLT----MNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSI 214
Cdd:COG0651  316 gLGTPLGLAGALFHLLnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLL 395

                        250       260
                 ....*....|....*....|..
gi 407259477 215 IQELTKQEMTTTATTISMLSLL 236
Cdd:COG0651  396 LQAALEAGAWLLAAVLLLSSLL 417
ndhB CHL00049
NADH dehydrogenase subunit 2
 2-211 2.03e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.10  E-value: 2.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVL---------------LSSMTNAWSTgqwdiTQLTYPLSCNL----LTTAIAIKLGLAPFHFW 62
Cdd:CHL00049 162 EATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLIN-----TQMYNSPGISIalifITVGIGFKLSLAPFHQW 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  63 FPEVLQGSSLTTALLLSTMMKLP----PTSILLLTSHSLNP---TLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHM 135
Cdd:CHL00049 237 TPDVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 136 GWMTIIII-------YNPKLTLLTFYIYV-LMT-ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLT 206
Cdd:CHL00049 317 GYVIIGIIvgdsndgYASMITYMLFYIFMnLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 407259477 207 GFLPK 211
Cdd:CHL00049 397 GFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-140 1.78e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 1.78e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQW--DITQLT-YPLSCN-------LLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG1008  160 IYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPLTaqlllflAFFIAFAVKVPMFPFHTWLPDAHvEA 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  70 SSLTTALLLSTMMK----------LPptsILLLTSHSLNPTLLtTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMT 139
Cdd:COG1008  240 PTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315


                 .
gi 407259477 140 I 140
Cdd:COG1008  316 L 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-216 3.64e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.02  E-value: 3.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477    1 IEATTKYFLVQAAASALVLLS----SMTNAWSTGQWDITQLTYPLSCNLLT-----TAIAIKLGLAPFHFWFPEV-LQGS 70
Cdd:TIGR01972 155 IYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhVEAP 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   71 SLTTALLLSTMMKLPPTSILLL-------TSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIII 143
Cdd:TIGR01972 235 TAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  144 YNPKLTLLTFYIYV----LMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:TIGR01972 314 SFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393


                  .
gi 407259477  216 Q 216
Cdd:TIGR01972 394 L 394
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 45-218 1.69e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.03  E-value: 1.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  45 LLTTAIAIKLGLAPFHFWFPEVLQG-SSLTTALLLSTMMKLPPTSILLLTSHSLNP---------TLLTTLSIMSIALGG 114
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGS 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 115 WMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLL--TFYI--YVLMTASIFLT----MNTTNTLKLPTLMTSWTKAP 186
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMP 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 407259477 187 TLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
2-211 4.02e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.05  E-value: 4.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLL-SSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVLQGS 70
Cdd:PRK02504 161 EAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslglalalvFVIAGIAFKISAVPFHQWTPDVYEGS 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  71 SLTTALLLSTMMKLPPTSI---LLLTSHSLNPT----LLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIII 143
Cdd:PRK02504 241 PTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLV 320

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259477 144 YNPK--LTLLTFY--IYVLMT----ASIFLTMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK02504 321 AGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-142 5.99e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.43  E-value: 5.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMT----NAWSTGQWDITQL-TYPLSCNLLT-------TAIAIKLGLAPFHFWFPEVLQ 68
Cdd:PRK05846 160 IYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPDAHV 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  69 -----GSSLTTALLLST----MMK--LPptsILLLTSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGW 137
Cdd:PRK05846 240 qaptaGSVLLAGILLKMgaygLLRfsLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 407259477 138 MTIII 142
Cdd:PRK05846 316 VTLGI 320
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-226 2.20e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 47.72  E-value: 2.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   3 ATTKYFLVQAAASALVLLSSMTNAWSTGQ--WDITQLT---YPLSCNLLT-----TAIAIKLGLAPFHFWFPEVL-QGSS 71
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  72 LTTALLLSTMMKLPPTSI------LLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYN 145
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAF 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 146 PKL----TLLTFYIYVLMTASIFL----TMNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQE 217
Cdd:PRK12561 298 TDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLG 377


                 ....*....
gi 407259477 218 LTKQEMTTT 226
Cdd:PRK12561 378 ITSSDVYSS 386
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 28-211 3.21e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 3.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  28 STGQWDITQL-TYPLSCNLLTTAIAI-------KLGLAPFHFWFPEVLQGSSLTTALLLSTMM---------KLPPTsil 90
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  91 LLTSHSLNPTLLTtLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPK------LTLLTfyIYVLMTASIF 164
Cdd:PRK12644 260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALF 336

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 407259477 165 LTM----NTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK12644 337 LVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-214 2.02e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 2.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   1 IEATTKYFLVQAAASALVLLSSMTNAWSTGQWDITQLTYPLSCN----------LLTTAIAIKLGLAPFHFWFPEVLQG- 69
Cdd:PRK08376 171 IEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENptvvakialaLFIAGLAMKSGAVPVHMWLPDAYPAa 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  70 -SSLTTALLLSTMMKLPPTSILLLTSHSLNPTLLTT------LSIMSIALGGWMGLNQTQTRKILAF**ISHMGWM---- 138
Cdd:PRK08376 251 pSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllgl 330

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 139 --TIIIIYNPKLTLL--------TFYI--YVLMTASIFLT----MNTTNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGL 202
Cdd:PRK08376 331 gvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410

                        250
                 ....*....|..
gi 407259477 203 PPLTGFLPKWSI 214
Cdd:PRK08376 411 PPFNGFASKWLI 422
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-138 6.86e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 6.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   3 ATTKYFLVQAAASALVLLSSMTNAWSTG--QWDITQL---TYPLSCNLLTTA-----IAIKLGLAPFHFWFPEV-LQGSS 71
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259477  72 LTTALLLSTMMKLPPTSIL------LLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWM 138
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12650 PRK12650
DUF4040 family protein;
46-215 1.50e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  46 LTTAIAIKLGLA--------PFHFWFPEVLQGSSLTTALLLSTMMKLPPTSILLLTS--HSLNPT---LLTTLSIMSIAL 112
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 113 GGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTM----NTTNTLKLPTLMTSWTK 184
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180       190
                 ....*....|....*....|....*....|.
gi 407259477 185 APTLNTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGML 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 41-158 1.81e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.05  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  41 LSCNLLTTAIAIKLGLAPFHFWFPEV-LQGSSLTTALLLSTMMKLPPTSILLLTS-------HSLNPTLLTTLSIMSIAL 112
Cdd:PRK08676 207 ASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAV 286

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 407259477 113 GGWMGLNQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYVL 158
Cdd:PRK08676 287 AAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 58-211 3.75e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.06  E-value: 3.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  58 PFHFWFPEVLQGSSLTTALLLS-TMMKLpptSILLLTShsLNP---------TLLTTLSIMSIALGGWMGLNQTQTRKIL 127
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLIL 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 128 AF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSL 199
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSM 367

                        170
                 ....*....|..
gi 407259477 200 AGLPPLTGFLPK 211
Cdd:PRK12647 368 AGLPPLFGFLAK 379
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-227 1.39e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.59  E-value: 1.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477   2 EATTKYFLVQAAASALVLLSSMTNAWSTGQWDI----------TQLTYPLSCNLLTTAIAI-KLGLAPFHFWFPE----- 65
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDaysea 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  66 ------VLQG--SSLTTALLLSTMMKLPPTSILL----LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAF**IS 133
Cdd:PRK08668 227 pqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 134 HMGWMTIIIIYNPKLTLL--TFYI--YVLMTASIFLTMNT----TNTLKLPTLMTSWTKAPTLNTTLMLTLLSLAGLPPL 205
Cdd:PRK08668 307 NGGYILVGLGLGTSLGFAggLFHVfnHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPM 386

                        250       260
                 ....*....|....*....|..
gi 407259477 206 TGFLPKWSIIQELTKQEMTTTA 227
Cdd:PRK08668 387 SGFASKWLIFEALISKGMPITA 408
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 16-218 1.61e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 39.37  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  16 ALVLLSSMTNAWS------TGQWDITQLTYPLSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLS-TM------- 81
Cdd:COG1009  181 GILLLGAIAGTLNfsellaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAaTMvkagvyl 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  82 -MKLPPtsILLLTSHSLnpTLLTTLSIMSIALGGWMGLNQTQTRKILAF**ISHMGWMTIIIiynpKLTLLTFYIYVLMT 160
Cdd:COG1009  261 lARLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLT 332

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 161 -----ASIFL-------TMNTTNTLKLPTLmtsWTKAPTLNTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:COG1009  333 haffkALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 45-216 3.26e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.41  E-value: 3.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  45 LLTTAIAIKLGLAPFHFWFPEVL-QGSSLTTALLLSTMMKLPPTSI-----LLLTSHSLNpTLLTTLSIMSIALGGWMGL 118
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGAI 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477 119 NQTQTRKILAF**ISHMGWMTIIIIYNPKLTLLTFYIYV----LMTASIFLTMN-------TTNTLKLPTLMTSwtkAPT 187
Cdd:PRK12665 293 AQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGlierqagSSSLRRLGGLAKA---SPL 369

                        170       180
                 ....*....|....*....|....*....
gi 407259477 188 LNTTLMLTLLSLAGLPPLTGFLPKWSIIQ 216
Cdd:PRK12665 370 LAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 49-163 4.39e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 4.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259477  49 AIAIKLGLAPFHFWFPEV-LQGSSLTTALLLSTMMKLP-------PTSILLLTSHSLNPTLLtTLSIMSIALGGWMGLNQ 120
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 407259477 121 TQTRKILAF**ISHMGWMTIIIIYNpKLTLLTFYIYVLMTASI 163
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGI 359
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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