|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-289 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 578.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00119 44 TQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00119 124 LMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00119 204 TGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00119 284 SIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVAN 332
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-288 |
8.55e-106 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 312.88 E-value: 8.55e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVIL 77
Cdd:COG1290 53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 78 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLT 156
Cdd:COG1290 131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 157 FLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNllGDPENFTPANPLVTPPHIKPEWYF 232
Cdd:COG1290 211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 421952746 233 LFAYAILRSIP--NKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAA 288
Cdd:COG1290 289 LPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-164 |
9.48e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 242.27 E-value: 9.48e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILL 78
Cdd:cd00284 35 IQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 79 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFL 158
Cdd:cd00284 115 LLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
....*.
gi 421952746 159 HESGSN 164
Cdd:cd00284 195 HEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
2-162 |
4.68e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 217.25 E-value: 4.68e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLL 79
Cdd:pfam00033 27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 80 TLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLH 159
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186
|
...
gi 421952746 160 ESG 162
Cdd:pfam00033 187 ETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
216-254 |
3.11e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 52.11 E-value: 3.11e-08
10 20 30
....*....|....*....|....*....|....*....
gi 421952746 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 254
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-289 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 578.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00119 44 TQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00119 124 LMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00119 204 TGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00119 284 SIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVAN 332
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-289 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 522.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00131 43 TQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00131 123 VMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00131 203 TGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILR 282
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00131 283 SIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 331
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-289 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 513.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00100 43 LQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00100 123 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00100 203 TGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILR 282
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00100 283 SIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVAD 331
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-289 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 511.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00074 44 AQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00074 124 VMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00074 204 TGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00074 284 SIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVAN 332
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-286 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 508.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00156 33 IQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00156 113 VMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQ 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00156 193 TGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILR 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWAL 286
Cdd:MTH00156 273 SIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-289 |
8.01e-180 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 499.83 E-value: 8.01e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00191 40 IQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLIL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00191 120 SMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00191 200 TGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILR 279
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00191 280 SIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVAN 328
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-289 |
2.59e-172 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 481.33 E-value: 2.59e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00145 44 IQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00145 124 SMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00145 204 TGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00145 284 SIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGN 332
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-289 |
5.20e-162 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 455.32 E-value: 5.20e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00034 43 IQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00034 123 TMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQ 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00034 203 TGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILR 282
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00034 283 SIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIAT 331
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-289 |
2.27e-161 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 453.75 E-value: 2.27e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00016 44 IQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00016 124 TMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00016 204 TGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00016 284 SIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSN 332
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-289 |
1.24e-137 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 393.69 E-value: 1.24e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLT 80
Cdd:MTH00053 44 IQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 81 LMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHE 160
Cdd:MTH00053 124 MILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 161 SGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00053 204 DGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILR 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 421952746 241 SIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00053 284 SIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGD 332
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
2-289 |
5.25e-137 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 391.76 E-value: 5.25e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 81
Cdd:MTH00022 43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 82 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHES 161
Cdd:MTH00022 123 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVD 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 162 GSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 241
Cdd:MTH00022 203 GSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 421952746 242 IPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00022 283 IPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVD 330
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
2-289 |
2.36e-133 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 382.73 E-value: 2.36e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 81
Cdd:MTH00224 45 QVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILT 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 82 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHES 161
Cdd:MTH00224 125 MATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 162 GSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 241
Cdd:MTH00224 205 GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 421952746 242 IPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00224 285 IPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTS 332
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
2-289 |
4.49e-110 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 323.81 E-value: 4.49e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 81
Cdd:MTH00033 41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 82 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHES 161
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 162 GSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLAL--FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 239
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 421952746 240 RSIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:MTH00033 281 RSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGD 330
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-288 |
8.55e-106 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 312.88 E-value: 8.55e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVIL 77
Cdd:COG1290 53 QILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 78 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLT 156
Cdd:COG1290 131 LLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLW 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 157 FLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNllGDPENFTPANPLVTPPHIKPEWYF 232
Cdd:COG1290 211 LLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYF 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 421952746 233 LFAYAILRSIP--NKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAA 288
Cdd:COG1290 289 LPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
2-256 |
9.88e-100 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 296.08 E-value: 9.88e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 81
Cdd:MTH00086 33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 82 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHES 161
Cdd:MTH00086 113 MMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHST 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 162 GSNNPLGIPSNCDKIPFHPYFSLKDLLGfMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 241
Cdd:MTH00086 193 GSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
|
250
....*....|....*
gi 421952746 242 IPNKLGGVLALAASV 256
Cdd:MTH00086 272 IPNKVLGVIALLMSI 286
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-164 |
9.48e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 242.27 E-value: 9.48e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILL 78
Cdd:cd00284 35 IQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 79 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFL 158
Cdd:cd00284 115 LLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
....*.
gi 421952746 159 HESGSN 164
Cdd:cd00284 195 HEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-250 |
4.17e-80 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 246.05 E-value: 4.17e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTL 81
Cdd:MTH00046 35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 82 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLHES 161
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 162 GSNNPLGIPSN-CDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 240
Cdd:MTH00046 195 GSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274
|
250
....*....|
gi 421952746 241 SIPNKLGGVL 250
Cdd:MTH00046 275 SINSKIGGLV 284
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
2-162 |
4.68e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 217.25 E-value: 4.68e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLL 79
Cdd:pfam00033 27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 80 TLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLIHLTFLH 159
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186
|
...
gi 421952746 160 ESG 162
Cdd:pfam00033 187 ETG 189
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
46-211 |
6.99e-46 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 152.40 E-value: 6.99e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 46 SLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 123
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 124 GGFSVDNPTLTRFFALHF-LLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLAL 202
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 421952746 203 FSPNLLGDP 211
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
165-289 |
3.36e-40 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 137.01 E-value: 3.36e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 165 NPLGIPSNCDKIPFHPYFSLKDLLGFMIMFLSLSSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 244
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 421952746 245 KLGGVLALAASVLILLLSPLLHKSKQRTMaFRPISQLLFWALAAN 289
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAG 124
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-167 |
7.78e-34 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 122.90 E-value: 7.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 1 TQILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILL 78
Cdd:PRK03735 54 IQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIF 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 79 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTF 157
Cdd:PRK03735 134 FVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLM 213
|
170
....*....|
gi 421952746 158 LHESGSNNPL 167
Cdd:PRK03735 214 IRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
2-167 |
8.31e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 112.12 E-value: 8.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 2 QILTGLLLAAHYTADTSLAFSSVVNTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLL 79
Cdd:CHL00070 47 QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAV 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 421952746 80 TLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLIHLTFL 158
Cdd:CHL00070 127 LTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMI 206
|
....*....
gi 421952746 159 HESGSNNPL 167
Cdd:CHL00070 207 RKQGISGPL 215
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
216-289 |
2.38e-28 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 104.48 E-value: 2.38e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 421952746 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLSPLLHKSKQRTMAFRPISQLLFWALAAN 289
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVD 74
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
216-254 |
1.62e-09 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 55.78 E-value: 1.62e-09
10 20 30
....*....|....*....|....*....|....*....
gi 421952746 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 254
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
216-254 |
4.85e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 54.41 E-value: 4.85e-09
10 20 30
....*....|....*....|....*....|....*....
gi 421952746 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 254
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
216-254 |
3.11e-08 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 52.11 E-value: 3.11e-08
10 20 30
....*....|....*....|....*....|....*....
gi 421952746 216 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 254
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
|
|
| |
