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Conserved domains on  [gi|440655381|gb|AGC22280|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Tristira magellanica]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-172 1.14e-34

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.14  E-value: 1.14e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381   2 NMMIMTISNVLNVNFIKMNHPMSMMMIIIIQTFVIGLMTGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYFKS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381  82 IMMIFTATTWLLIMSIFILFDMSLFMdffknsetfsiNTSINYQEMSMSLNKIYNNPTFVVSMMMMIYLFLTLLAVVKIT 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655381 162 NINQGPIRKTS 172
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-172 1.14e-34

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.14  E-value: 1.14e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381   2 NMMIMTISNVLNVNFIKMNHPMSMMMIIIIQTFVIGLMTGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYFKS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381  82 IMMIFTATTWLLIMSIFILFDMSLFMdffknsetfsiNTSINYQEMSMSLNKIYNNPTFVVSMMMMIYLFLTLLAVVKIT 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655381 162 NINQGPIRKTS 172
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-172 1.14e-34

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.14  E-value: 1.14e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381   2 NMMIMTISNVLNVNFIKMNHPMSMMMIIIIQTFVIGLMTGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYFKS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381  82 IMMIFTATTWLLIMSIFILFDMSLFMdffknsetfsiNTSINYQEMSMSLNKIYNNPTFVVSMMMMIYLFLTLLAVVKIT 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655381 162 NINQGPIRKTS 172
Cdd:MTH00166 150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 3-170 2.51e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 50.39  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381   3 MMIMTISNVLNVNFIKMNHPMSMMMIIIIQTFVIGlMTGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYFKSI 82
Cdd:MTH00212   4 SLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSC-LIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKKY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381  83 MMIFTATTWLLIMSIFILFDMSLFMDFFKNSetfsintsinyqEMSMSLNKIYNNPTFVVSMMMMIYLFLTLLAVVKITN 162
Cdd:MTH00212  83 FKGFGMILISLNLYLLLMTLGSSNFSPMLNL------------KLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQ 150


                 ....*...
gi 440655381 163 INQGPIRK 170
Cdd:MTH00212 151 YYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 3-169 1.38e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 45.65  E-value: 1.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381   3 MMIMTISNVLNVNFIKMNHPMSMMMIIIIQTFVIGLMTGtMMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYFKSI 82
Cdd:MTH00152   4 MILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFK 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655381  83 MMIFTattwllIMSIFILFDMSLFMDFFKNSETFSINTSINYQEMSMSLNKIYNNPTFVVSMMMMIYLFLTLLAVVKITN 162
Cdd:MTH00152  83 FVFFS------LTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICY 156


                 ....*..
gi 440655381 163 INQGPIR 169
Cdd:MTH00152 157 YEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 46-67 4.12e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 36.27  E-value: 4.12e-03
                         10        20
                 ....*....|....*....|..
gi 440655381  46 SFwLSYILFLTFLGGMLVLFIY 67
Cdd:MTH00138  49 SF-LSLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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