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Conserved domains on  [gi|440655423|gb|AGC22319|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Lentula callani]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.73e-41

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 4.73e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423   3 KMLIFSISNILNINFMKLNHPMSMMMFIIMQTMSVCMMTGMMMESFWMSYMLFLTFLGGMLVLFIYISSIASNEMFYLKL 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423  83 KYFIWSMIILTVMMLTFNILNKsflmeiienseSLMMNLTINYQEMSLSLNKLYNNPTFIITMMLMVYLFLTLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSE-----------MSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655423 163 NINQGPIRKMK 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.73e-41

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 4.73e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423   3 KMLIFSISNILNINFMKLNHPMSMMMFIIMQTMSVCMMTGMMMESFWMSYMLFLTFLGGMLVLFIYISSIASNEMFYLKL 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423  83 KYFIWSMIILTVMMLTFNILNKsflmeiienseSLMMNLTINYQEMSLSLNKLYNNPTFIITMMLMVYLFLTLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSE-----------MSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655423 163 NINQGPIRKMK 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.73e-41

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 135.32  E-value: 4.73e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423   3 KMLIFSISNILNINFMKLNHPMSMMMFIIMQTMSVCMMTGMMMESFWMSYMLFLTFLGGMLVLFIYISSIASNEMFYLKL 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423  83 KYFIWSMIILTVMMLTFNILNKsflmeiienseSLMMNLTINYQEMSLSLNKLYNNPTFIITMMLMVYLFLTLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSE-----------MSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 440655423 163 NINQGPIRKMK 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 1.02e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 56.94  E-value: 1.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423   1 MMKMLIFSISNILNINFMKLNHPMSMMMFIIMQTMSVCMMTGMMMESfWMSYMLFLTFLGGMLVLFIYISSIASNEMFYL 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423  81 KLKYFIWSMIILTVMMLTFNILNKSFLMEIIENSESLMMnltinyqemslsLNKLYNNPTFIITMMLMVYLFLTLIAVVK 160
Cdd:MTH00212  80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELN------------VSKILSNNNIPILLFLGLILLIALLMVVK 147

                        170
                 ....*....|.
gi 440655423 161 ITNINQGPIRK 171
Cdd:MTH00212 148 ICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 1.67e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 53.74  E-value: 1.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423   1 MMKMLIFSISNILNINFMKLNHPMSMMMFIIMQTMSVCMMTGMMMeSFWMSYMLFLTFLGGMLVLFIYISSIASNEMFYL 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655423  81 KLKYFIWSMIILTVMMLTFnilnksFLMEIIENSESLMMNLTINYQEMSLSLNKLYNNPTFIITMMLMVYLFLTLIAVVK 160
Cdd:MTH00152  80 NFKFVFFSLTLFGFLGLFF------FFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                        170
                 ....*....|
gi 440655423 161 ITNINQGPIR 170
Cdd:MTH00152 154 ICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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