|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-193 |
1.68e-129 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 367.57 E-value: 1.68e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILM 292
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00156 293 ILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-193 |
7.43e-57 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 183.84 E-value: 7.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPF*IVAMAAIHLFFLHQTGSNNPIG----LNSNIDK 75
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 76 IPFHPYFTFKDSITFVIMtsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALF 153
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 441495616 154 LSISILMILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:COG1290 312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVL 351
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
65-193 |
1.60e-40 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 134.31 E-value: 1.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 65 NPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 144
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 441495616 145 KLGGVIALFLSISILMILPFYNKTKFRGiQFYPINQILFWMMVIVVFLL 193
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVL 128
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
116-193 |
1.77e-32 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 112.19 E-value: 1.77e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 441495616 116 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVL 78
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
95-193 |
2.37e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 53.65 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 95 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTKFRGI 173
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNP 123
|
90 100
....*....|....*....|
gi 441495616 174 QFYPINQILFWMMVIVVFLL 193
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVALWL 143
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-193 |
1.68e-129 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 367.57 E-value: 1.68e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILM 292
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00156 293 ILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-193 |
2.11e-108 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 314.92 E-value: 2.11e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00145 144 ATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHP 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00145 224 YYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILF 303
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00145 304 FLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFIL 336
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-193 |
4.96e-106 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 308.38 E-value: 4.96e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00191 140 ATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHP 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00191 220 YFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLF 299
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00191 300 LLPLLHTSKQRSNTFRPLTQVVFWLWVANFILL 332
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-193 |
1.64e-105 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 307.60 E-value: 1.64e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00119 144 ATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00119 224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILF 303
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00119 304 LMPFLHTSKQRSMTFRPLSQLLFWTLVANLLIL 336
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-193 |
4.07e-104 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 304.27 E-value: 4.07e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00131 143 ATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHP 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00131 223 YFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLM 302
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00131 303 VVPILHTSKQRGLTFRPLTQFLFWTLVADVLIL 335
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-193 |
1.80e-103 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 302.76 E-value: 1.80e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00074 144 ATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHP 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00074 224 YFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILM 303
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00074 304 LIPMLHTSKQRSLMFRPLTQILFWLLVANTLIL 336
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-193 |
4.14e-102 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 299.25 E-value: 4.14e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00100 143 ATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHP 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00100 223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILA 302
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00100 303 IIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTL 335
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-193 |
6.45e-102 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 298.51 E-value: 6.45e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00016 144 ATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHP 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00016 224 YYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILF 303
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00016 304 FLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLL 336
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-193 |
3.77e-91 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 271.19 E-value: 3.77e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00034 143 ATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHT 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00034 223 YFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLF 302
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00034 303 LVPILHTSNNQSSTFRPLSQIAFWLLIATFFIL 335
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-193 |
2.03e-84 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 254.24 E-value: 2.03e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00022 142 ATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHV 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00022 222 YYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILF 301
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00022 302 FLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILL 334
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-187 |
7.14e-84 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 252.53 E-value: 7.14e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00224 144 ATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHP 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00224 224 YYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILF 303
|
170 180
....*....|....*....|....*..
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMV 187
Cdd:MTH00224 304 ILPLTSVMNKRSLPFYPLNQLLFWLLV 330
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-193 |
2.03e-83 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 251.55 E-value: 2.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00053 144 ATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHY 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00053 224 YYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLF 303
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00053 304 FLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLL 336
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-193 |
7.14e-61 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 194.00 E-value: 7.14e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00033 140 ATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHV 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTSLLILLClINPYI---LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSIS 157
Cdd:MTH00033 220 YFTIKDILGFLILFGVFVIIG-IEPRIetlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASIL 298
|
170 180 190
....*....|....*....|....*....|....*.
gi 441495616 158 ILMILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00033 299 VLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-193 |
9.26e-60 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 190.15 E-value: 9.26e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00086 132 AVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGP 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 81 YFTFKDSITFVIMTsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00086 212 EYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFY 290
|
170 180 190
....*....|....*....|....*....|...
gi 441495616 161 ILPFYNktkFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:MTH00086 291 FFIFVN---NYTSCLNKLNKFLVFSFIVVNVIL 320
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-193 |
7.43e-57 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 183.84 E-value: 7.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPF*IVAMAAIHLFFLHQTGSNNPIG----LNSNIDK 75
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 76 IPFHPYFTFKDSITFVIMtsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALF 153
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 441495616 154 LSISILMILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:COG1290 312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVL 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-193 |
3.09e-41 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 142.43 E-value: 3.09e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFH 79
Cdd:MTH00046 134 ATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFH 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 80 PYFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISIL 159
Cdd:MTH00046 214 SYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFF 292
|
170 180 190
....*....|....*....|....*....|....
gi 441495616 160 MILPFYNKTKFRGIqfypINQILFWMMVIVVFLL 193
Cdd:MTH00046 293 LWVPTFNGSSVYSV----WRQVNFWLIVSLFFSL 322
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
65-193 |
1.60e-40 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 134.31 E-value: 1.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 65 NPIGLNSNIDKIPFHPYFTFKDSITFVIMTSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 144
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 441495616 145 KLGGVIALFLSISILMILPFYNKTKFRGiQFYPINQILFWMMVIVVFLL 193
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVL 128
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
116-193 |
1.77e-32 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 112.19 E-value: 1.77e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 441495616 116 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVL 78
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-111 |
4.04e-27 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 100.78 E-value: 4.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHF-VLPF*IVAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFH 79
Cdd:pfam13631 58 LRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFW 137
|
90 100 110
....*....|....*....|....*....|..
gi 441495616 80 PYFTFKDSITFVIMTSLLILLCLINPYILGDP 111
Cdd:pfam13631 138 PVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-64 |
1.74e-21 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 87.04 E-value: 1.74e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTGSN 64
Cdd:cd00284 137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-62 |
5.25e-19 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 80.12 E-value: 5.25e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 441495616 1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPF*IVAMAAIHLFFLHQTG 62
Cdd:pfam00033 128 ATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
91-193 |
9.56e-11 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 57.50 E-value: 9.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 91 VIMTS--LLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NK 167
Cdd:COG5679 44 VILGTiaLCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNV 118
|
90 100
....*....|....*....|....*.
gi 441495616 168 TKFRGIQFYPINQILFWMMVIVVFLL 193
Cdd:COG5679 119 NKFQNPFRRPVATAVFLFGTLVTLWL 144
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
95-193 |
2.87e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 56.16 E-value: 2.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 95 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTKFRGI 173
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNP 123
|
90 100
....*....|....*....|
gi 441495616 174 QFYPINQILFWMMVIVVFLL 193
Cdd:CHL00058 124 FRRPVATTVFLIGTAVALWL 143
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
95-193 |
2.37e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 53.65 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495616 95 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTKFRGI 173
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNP 123
|
90 100
....*....|....*....|
gi 441495616 174 QFYPINQILFWMMVIVVFLL 193
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVALWL 143
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-67 |
4.50e-05 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 42.39 E-value: 4.50e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 441495616 3 VITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPF*IVAMAAIHLFFLHQTGSNNPI 67
Cdd:PRK03735 158 VGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-67 |
8.35e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 41.63 E-value: 8.35e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 441495616 3 VITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPF*IVAMAAIHLFFLHQTGSNNPI 67
Cdd:CHL00070 150 IVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|