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Conserved domains on  [gi|452889248|gb|AGG18599|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Ceracris kiangsu]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 3.79e-115

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 342.89  E-value: 3.79e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 LAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 161 ILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 452889248 241 IIVVLLGSYLGYFISDFNFSYSLFSLNTFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 3.79e-115

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 342.89  E-value: 3.79e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 LAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 161 ILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 452889248 241 IIVVLLGSYLGYFISDFNFSYSLFSLNTFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-254 7.17e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 171.10  E-value: 7.17e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNC-GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:COG1009  250 AATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFH 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLkDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLKWINCF 158
Cdd:COG1009  330 LLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPL 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 159 IFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWL---------IFPIPYM 229
Cdd:COG1009  409 LLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELH 488

                        250       260
                 ....*....|....*....|....*
gi 452889248 230 IVLPYYLKFLTIIVVLLGSYLGYFI 254
Cdd:COG1009  489 LAHGLLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-254 3.63e-40

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 147.43  E-value: 3.63e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248    3 TLVTAGVYLLIRFSPM-LYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHLL 81
Cdd:TIGR01974 254 TMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLM 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   82 AHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIFI 161
Cdd:TIGR01974 334 THAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFV 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  162 LFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIV---------- 231
Cdd:TIGR01974 414 AGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehh 493

                         250       260
                  ....*....|....*....|....
gi 452889248  232 -LPYYLKFLTIIVVLLGSYLGYFI 254
Cdd:TIGR01974 494 hVPALEIWSPTAVAILGILLAYLL 517
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-166 3.02e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 112.41  E-value: 3.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248    1 SSTLVTAGVYLLIRFSPMLYMYNCGW--FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKL 75
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   76 AFFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWI 155
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 452889248  156 NCFIFILFFLS 166
Cdd:pfam00361 281 IFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 3.79e-115

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 342.89  E-value: 3.79e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 LAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 161 ILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 452889248 241 IIVVLLGSYLGYFISDFNFSYSLFSLNTFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-291 2.60e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 247.83  E-value: 2.60e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYN-CGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:MTH00151 215 SSTLVTAGVFLLIRFFPFLSSSSgFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFH 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFI 159
Cdd:MTH00151 295 LYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLM 374

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 160 FILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFL 239
Cdd:MTH00151 375 VLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLL 454

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 452889248 240 TIIVVLLGSYLGYFISDFNFSYSLFSLNTFSFisftGSMWFMHFLSTNLVSY 291
Cdd:MTH00151 455 IGFVILLGLFLSFGFWDSGFSSSKMVKLSFFF----SSMWFLSPLSSQPLKS 502
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-291 1.01e-75

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 241.09  E-value: 1.01e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLY-MYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:MTH00209 214 SSTLVTAGVYLLIRFFPSLFsSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFH 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFI 159
Cdd:MTH00209 294 LITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMT 373

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 160 FILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFL 239
Cdd:MTH00209 374 LILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLL 453

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 452889248 240 TIIVVLLGSYLGYFISDFNFsyslFSLNTFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:MTH00209 454 PIMLILFGVLLMYMVLKKNF----FLIKGYKVNYFLSQMWFLPDLSSQPVNK 501
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-286 4.41e-74

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 236.97  E-value: 4.41e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNcgWF---LLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAF 77
Cdd:MTH00207 218 SSTLVTAGVFLLIRFYPFLSSTY--WFnpaLLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLAL 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  78 FHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINC 157
Cdd:MTH00207 296 FHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNS 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 158 FIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLK 237
Cdd:MTH00207 376 LMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYK 455

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 452889248 238 FLTIIVVLLGSYLGYFISDFNFSYSLFSLNTFSFISFTGSMWFMHFLST 286
Cdd:MTH00207 456 LLPLLVVTLGALLAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSS 504
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-276 1.36e-59

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 199.41  E-value: 1.36e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPM-LYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:MTH00211 243 SSTMVVAGVFLLIRLSPLfQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLH 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFI 159
Cdd:MTH00211 323 ICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWA 402

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 160 FILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIV-LPYYLKF 238
Cdd:MTH00211 403 LLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKL 482

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 452889248 239 LTIIVVLLGSYLGYFISdfNFSYSLFSLNTFSFISFTG 276
Cdd:MTH00211 483 MPLLVTIVGLLLGLELV--NLTHKQLKTSTLSFSNMLG 518
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-251 2.00e-57

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 193.84  E-value: 2.00e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYN-----CgwflLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKL 75
Cdd:MTH00004 248 SSTMVVAGIFLLIRTHPLLQNNQtaltiC----LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQL 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 AFFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWI 155
Cdd:MTH00004 324 AFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYL 403

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 156 NCFIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPI-PYMIVLPY 234
Cdd:MTH00004 404 NAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPT 483

                        250
                 ....*....|....*..
gi 452889248 235 YLKFLTIIVVLLGSYLG 251
Cdd:MTH00004 484 TTKLAALIVTILGILLA 500
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-291 6.66e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 182.09  E-value: 6.66e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYmyNCGWFL---LFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAF 77
Cdd:MTH00208 275 SSTMVVAGVFLLIRTSPLIS--NSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLAL 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  78 FHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINC 157
Cdd:MTH00208 353 FHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNL 432

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 158 FIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPyMIVLPYYLK 237
Cdd:MTH00208 433 LSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILK 511

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 452889248 238 FLTIIVVLLGSylgYFISDFNFSYSLFSLNTFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:MTH00208 512 SLPLIVTIIGA---AFSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISF 562
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-247 7.05e-52

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 178.89  E-value: 7.05e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFL-LFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:MTH00108 249 SSTMVVAGVFLLIRFHPLMENNKTIQTLtLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFI 159
Cdd:MTH00108 329 ICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWA 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 160 FILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFP--IPYMiVLPYYLK 237
Cdd:MTH00108 409 LLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLK 487

                        250
                 ....*....|
gi 452889248 238 FLTIIVVLLG 247
Cdd:MTH00108 488 LTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-271 2.42e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 174.71  E-value: 2.42e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPML-----YMYNCgwflLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKL 75
Cdd:MTH00066 246 SSTMVVAGIFLLIRFHPLLennqtALTIC----LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 AFFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWI 155
Cdd:MTH00066 322 AFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNL 401

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 156 NCFIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIV-LPY 234
Cdd:MTH00066 402 NSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPT 481

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 452889248 235 YLKFLTIIVVLLGSYLGYFISDFnFSYSLFSLNTFSF 271
Cdd:MTH00066 482 FMKLAALLVTLLGLLIALDLAKI-TSKTTPKTKMHSF 517
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-254 7.17e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 171.10  E-value: 7.17e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNC-GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:COG1009  250 AATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFH 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLkDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLKWINCF 158
Cdd:COG1009  330 LLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPL 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 159 IFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWL---------IFPIPYM 229
Cdd:COG1009  409 LLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELH 488

                        250       260
                 ....*....|....*....|....*
gi 452889248 230 IVLPYYLKFLTIIVVLLGSYLGYFI 254
Cdd:COG1009  489 LAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-182 2.42e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 164.23  E-value: 2.42e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMlyMYNCGWFL---LFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAF 77
Cdd:MTH00137 254 SSTMVVAGIFLLIRLSPL--MENNQTALttcLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAF 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  78 FHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINC 157
Cdd:MTH00137 332 LHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNA 411

                        170       180
                 ....*....|....*....|....*.
gi 452889248 158 FIFILFFLSTGLTASYSFRL-FYYSM 182
Cdd:MTH00137 412 WALTLTLIATSFTAVYSLRVvFFVSM 437
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-254 3.63e-40

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 147.43  E-value: 3.63e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248    3 TLVTAGVYLLIRFSPM-LYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHLL 81
Cdd:TIGR01974 254 TMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLM 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   82 AHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIFI 161
Cdd:TIGR01974 334 THAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFV 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  162 LFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIV---------- 231
Cdd:TIGR01974 414 AGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehh 493

                         250       260
                  ....*....|....*....|....
gi 452889248  232 -LPYYLKFLTIIVVLLGSYLGYFI 254
Cdd:TIGR01974 494 hVPALEIWSPTAVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-254 9.18e-39

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 143.38  E-value: 9.18e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   3 TLVTAGVYLLIRFSPM-LYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMsiLAMG---YlKLAFF 78
Cdd:PRK06590 258 TMVTAGVYLVARMSPLfELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMF--LALGvgaY-AAAIF 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  79 HLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEmVCLKWINCF 158
Cdd:PRK06590 335 HLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHIN 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 159 IFILFFLSTGLTASYSFRLFYYSMSGDNNfYSSFSFNDNGYYISFGMIALLFVAVFGG-----SFLSWLIFP-----IPY 228
Cdd:PRK06590 414 LFVAGLVGAFLTAFYSFRLIFLVFHGKEK-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEA 492

                        250       260
                 ....*....|....*....|....*.
gi 452889248 229 MIVLPYYLKFLTIIVVLLGSYLGYFI 254
Cdd:PRK06590 493 EHHLPVWVALLPLVVALAGIALAWLL 518
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-284 4.96e-38

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 141.37  E-value: 4.96e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLL-FIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFH 79
Cdd:MTH00020 249 AATMVTAGVFLLIRSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  80 LLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFI 159
Cdd:MTH00020 329 LMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFA 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 160 FILFFLSTGLTASYSFRLFYYS-MSGDNNFYSSFSFNDNG-YYISFGMIALLFVAVFGGSFLSWLI--FPIPYMIVLPYY 235
Cdd:MTH00020 409 YWLGCFSALLTAFYSIRLIYLTfLSNTNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLS 488

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 452889248 236 LKFLTIIVVLLGSYLGYFIsdFNFSYSLFSLnTFSFI-----SFTGSMWFMHFL 284
Cdd:MTH00020 489 IKLLPVFLSLGGIGLVIIL--YFYSSKTFRV-PFSFIgrnsyTFLGSAWQFNYI 539
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-283 6.64e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 141.30  E-value: 6.64e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMlymYNCGWFLL----FIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLA 76
Cdd:MTH00210 250 AATMVTAGVFLIIRSGPL---FEGSPLALtivtILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTS 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  77 FFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWIN 156
Cdd:MTH00210 327 LFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYI 406

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 157 CFIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFN--DNGYYISFGMIALLFVAVFGGS-----FLSWLIFPIpym 229
Cdd:MTH00210 407 AFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPI--- 483

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 452889248 230 ivLPYYLKFLTIIVVLLGSYLGYFISDFNFSYSLFSLNTFSFISFTGSMWFMHF 283
Cdd:MTH00210 484 --VPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKISRRGVSIRLYHVIYTFLNS 535
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-185 2.69e-30

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 119.74  E-value: 2.69e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   3 TLVTAGVYLLIRFSPMLYMY-NCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHLL 81
Cdd:PRK07376 268 TMVAAGVFLVARMYPVFEQFpAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLM 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  82 AHALFKALLFMCAGSKIHNLKD--------SQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLK 153
Cdd:PRK07376 348 THAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA 427

                        170       180       190
                 ....*....|....*....|....*....|..
gi 452889248 154 wiNCFIFILFFLSTGLTASYSFRLFYYSMSGD 185
Cdd:PRK07376 428 --NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-166 3.02e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 112.41  E-value: 3.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248    1 SSTLVTAGVYLLIRFSPMLYMYNCGW--FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKL 75
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   76 AFFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWI 155
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 452889248  156 NCFIFILFFLS 166
Cdd:pfam00361 281 IFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 3-203 5.02e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 107.67  E-value: 5.02e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   3 TLVTAGVYLLIR----FSPMLYMYNcgwFLLFIGCMTmymAGLGANFEF---DLKKIIALSTLSQLGLMMSILAMGYLKL 75
Cdd:CHL00025 268 TMVAAGIFLVARllplFIVIPYIMN---LISLIGIIT---ALLGATLALaqkDIKRGLAYSTMSQLGYMMLALGIGSYRA 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 AFFHLLAHALFKALLFMCAGSKIHNL--------KDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:CHL00025 342 ALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL 421

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 148 EMVclkWINCFIF-ILFFLSTGLTASYSFRLFYYSMSGD---NNFYSSFSFNDNGYYISF 203
Cdd:CHL00025 422 NDS---WLYSPIFaIIAWSTAGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 173-291 9.13e-25

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 97.62  E-value: 9.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  173 YSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIFPIPYMIVLPYYLKFLTIIVVLLGSYLGY 252
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 452889248  253 FISDFNFSYSLFSLNtFSFISFTGSMWFMHFLSTNLVSY 291
Cdd:pfam06455  81 ELSNLSNKQLKKSLN-FNLHSFSGSMWFFPNLSHRLIPK 118
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-149 3.13e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 102.34  E-value: 3.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFI-GCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAM-GYLKLAFF 78
Cdd:MTH00032 264 AATMVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLF 343

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 452889248  79 HLLAHALFKALLFMCAGSKIHNLK-DSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEM 149
Cdd:MTH00032 344 HLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
PRK12650 PRK12650
DUF4040 family protein;
4-177 1.27e-23

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 100.50  E-value: 1.27e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFSPmLYMYNCGWFLLFIGC--MTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFF 78
Cdd:PRK12650 250 VVKAGIYLLLRFSP-VFHDVAVWNWLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVV 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  79 HLLAHALFKALLFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCF 158
Cdd:PRK12650 329 HTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNA 407

                        170       180
                 ....*....|....*....|...
gi 452889248 159 IFILFFLSTGLTA----SYSFRL 177
Cdd:PRK12650 408 GVVLLLVGAALGAvftfAYSARL 430
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-274 3.13e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 98.84  E-value: 3.13e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:MTH00095 203 SSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHL 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 LAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIF 160
Cdd:MTH00095 283 LSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFS 362

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 161 ILFFLSTGLTASYSFRLFYysmsgdnNFYSSFSFNDNGYYISFGMIALLFVAVFGG-SFLSWLIFPIPYMIVLPYYLKFL 239
Cdd:MTH00095 363 LMFFFSVFLTFGYSYRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLYLDFY 435

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 452889248 240 TIIVVLLgsyLGYFISDFNFSYSLFSLNTFSFISF 274
Cdd:MTH00095 436 VPLFYLF---MIMLFSFFFFKLLFKELKYKFFVDY 467
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-180 3.67e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 98.30  E-value: 3.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLY----MYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---L 73
Cdd:COG0651  244 SGLLTKVGVYAILRVLTLLFgadpALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTplgL 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  74 KLAFFHLLAHALFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVcLK 153
Cdd:COG0651  324 AGALFHLLNHALAKALLFLAAGA-IERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LE 401

                        170       180
                 ....*....|....*....|....*..
gi 452889248 154 WINCFIFILFFLSTGLTASYSFRLFYY 180
Cdd:COG0651  402 AGAWLLAAVLLLSSLLTLAYFVRIFGR 428
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-180 1.36e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 91.09  E-value: 1.36e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFspMLYMY--------NCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG- 71
Cdd:PRK08375 241 SGLVTKVAVYALIRI--YFTVFggdfrfalGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLt 318

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  72 --YLKLAFFHLLAHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILE 148
Cdd:PRK08375 319 plALAAGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVG 397

                        170       180       190
                 ....*....|....*....|....*....|..
gi 452889248 149 MVCLKWINCFIFILffLSTGLTASYSFRLFYY 180
Cdd:PRK08375 398 AVEAGQWLVLAVLL--ASSLLALLYFLRIWYR 427
PRK12646 PRK12646
DUF4040 family protein;
1-148 7.85e-20

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 89.43  E-value: 7.85e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNC-GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG-------- 71
Cdd:PRK12646 249 SATMVKAGIFLLFRFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqq 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  72 ---------YLKLAFFHLLAHALFKALLFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 142
Cdd:PRK12646 329 daiasiyvfVLFAALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLS 407


                 ....*.
gi 452889248 143 KDLILE 148
Cdd:PRK12646 408 KEMFLD 413
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-148 7.88e-20

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 89.21  E-value: 7.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPML---YMYNcgWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LK 74
Cdd:PRK12647 234 SATMVKAGIYLLARLNPVLggtPLWQ--TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSelaIK 311

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 452889248  75 LAFFHLLAHALFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12647 312 AAVLFLVAHSLYKGALFMVAGI-IDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-179 1.61e-18

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 85.75  E-value: 1.61e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFSPMlYMYNCGW--FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL- 80
Cdd:PRK12644 245 MVKAGIYLVARLAPG-FADVPVWrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLa 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 --LAHALFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMV----CLKW 154
Cdd:PRK12644 324 mlLAHALFKAALFLVVGI-IDHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGP 402

                        170       180
                 ....*....|....*....|....*
gi 452889248 155 INCFIFILFFLSTGLTASYSFRLFY 179
Cdd:PRK12644 403 AGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-176 2.26e-18

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 85.24  E-value: 2.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLymynCG---WFLL--FIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYlKL 75
Cdd:PRK12648 246 SATMVKAGVFLLARLWPVL----AGteeWFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGS-PL 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 A----FFHLLAHALFKALLFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----IL 147
Cdd:PRK12648 321 AavaaIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTL 399

                        170       180
                 ....*....|....*....|....*....
gi 452889248 148 EMVCLKWINCFIFILFFLSTGLTASYSFR 176
Cdd:PRK12648 400 DTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-184 4.26e-17

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 81.12  E-value: 4.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPmLYMYNCGWFLLF--IGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKL--- 75
Cdd:PRK12645 249 SATMVKAGIYLVARFTP-IFAGSQVWFWTVtlVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyq 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 -------------AFFHLLAHALFKALLFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 142
Cdd:PRK12645 328 gddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLS 406

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 452889248 143 KDLILE-MVCLKWINCF--------IFILFFLSTGLTASYSFRLFYYSMSG 184
Cdd:PRK12645 407 KEMFFEsMLNATEANLFsldtwgvlFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-148 7.70e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 77.56  E-value: 7.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNcGWFLLF--IGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSIlaMGY------ 72
Cdd:PRK12649 253 SATMVKAGVYLVARIHPIFSGTE-AWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYttyhep 329

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 452889248  73 ---LKLAFFHLLAHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12649 330 glgVAAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-179 1.23e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.55  E-value: 1.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWF---------LLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG 71
Cdd:PRK12667 262 SGLVVNVGAYAIIRFLYTIFGISPSLIdfraalspiLIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  72 Y---LKLAFFHLLAHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12667 342 TqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420

                        170       180       190
                 ....*....|....*....|....*....|.
gi 452889248 149 MVCLKWINCFIFILfFLSTGLTASYSFRLFY 179
Cdd:PRK12667 421 ALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-177 8.79e-15

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 74.03  E-value: 8.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCG----WFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---L 73
Cdd:PRK08377 245 SAFVVKAGLYAMARILYLMQNANGWssvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTqagV 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  74 KLAFFHLLAHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeMVCLK 153
Cdd:PRK08377 325 DAGVFHMINHAIVKALLFLAVGYVGITLG-GTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLS 402

                        170       180
                 ....*....|....*....|....
gi 452889248 154 WINCFIFILFFLSTGLTASYSFRL 177
Cdd:PRK08377 403 AGYTWPVALVLGASVVEAVYYFRL 426
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 2-171 1.28e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 73.79  E-value: 1.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   2 STLVTAGVYLLIRFSPMLYMynCGW---FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFF 78
Cdd:PRK07390 260 SVVVATGAWVLIKLQPVLAL--SPValtVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALL 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  79 HLLAHALFKALLFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEMVCLKWINCF 158
Cdd:PRK07390 338 LLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSP 413

                        170
                 ....*....|....
gi 452889248 159 IFILFFLST-GLTA 171
Cdd:PRK07390 414 WLVGVLLLVnALTA 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-179 2.51e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 72.82  E-value: 2.51e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   7 AGVYLLIR-----FSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILAMGY---- 72
Cdd:PRK08376 264 AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDpama 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  73 ------LKLAFFHLLAHALFKALLFMCAGSKIHNLkDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLI 146
Cdd:PRK08376 344 sygeiaLAGGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                        170       180       190
                 ....*....|....*....|....*....|...
gi 452889248 147 LEMVCLkwINCFIFILFFLSTGLTASYSFRLFY 179
Cdd:PRK08376 423 YESSAL--FNPILGVIAMIGSVLTLASFVKVFH 453
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-259 2.52e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 72.60  E-value: 2.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:MTH00063 196 SSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQL 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  81 LAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIF 160
Cdd:MTH00063 276 VSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLL 355

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 161 ILFFLSTGLTASYSFRLFyysmsgdNNFYSSFSFNDNGYYISFGMIALLfvaVFGGSFLSWLIFPI-PYMIVLPYYLKFL 239
Cdd:MTH00063 356 LVVILCVFLSYLYSFRLC-------LILFGVKSSLSSGVRFLFFNSGLM---VFLWLFINYYVFLLlDEVVYLGVFISLV 425

                        250       260
                 ....*....|....*....|
gi 452889248 240 TIIVVLLGSYLGYFISDFNF 259
Cdd:MTH00063 426 LLLVQLLGLLVGVLFYDSNL 445
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-148 2.59e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 66.68  E-value: 2.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGW--FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMM------------- 65
Cdd:PRK08667 244 SGVMLKVAVYGLVRFLMDVLSPELWWgvLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgvyg 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  66 -SILAMGYLKLAFFHLLAHALFKALLFMCAGSKIHNLKDsQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKD 144
Cdd:PRK08667 324 lDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....
gi 452889248 145 LILE 148
Cdd:PRK08667 403 LLYE 406
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-148 2.92e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.51  E-value: 2.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   5 VTAGVYLLIRFSPMLYmyNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGylklAFFHLlAHA 84
Cdd:PRK07234 227 VKAGVFPLVRCALDVP--GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHG 299

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 452889248  85 LFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK07234 300 LVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
8-147 3.44e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 63.38  E-value: 3.44e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   8 GVYLLIRFSPmlymyncGWFLL-FIGC-MTMYMAGLgANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFFHLLA 82
Cdd:PRK12668 229 AVYALARAFP-------GTELLiYIGAaMAVYGVFF-ALLENDLRRLLSYHIVSQVGYMVAGIGIGTalaINGAVAHAFN 300

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 452889248  83 HALFKALLFMCAGSKIHNLKDSqNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK12668 301 HILYKGLLFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 25-179 4.28e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 62.91  E-value: 4.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  25 GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMM---SILAMGYLKLAFFHLLAHALFKALLFMCAGSkIHNL 101
Cdd:PRK06589 280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248 102 KDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLK---WINCFIFILFFLSTGLTASYSFRLF 178
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438


                 .
gi 452889248 179 Y 179
Cdd:PRK06589 439 S 439
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 25-147 9.14e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.21  E-value: 9.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  25 GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLM--------------MSILAMGYLKLAFFHLLAHALFKALL 90
Cdd:PRK06521 276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIfvglglamvfiaygMPLLAALALTAALYHLLNHALFKSLL 355

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 452889248  91 FMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK06521 356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLL 411
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 25-179 1.21e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.94  E-value: 1.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  25 GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFFHLLAHALFKALLFMCAGSKIHNL 101
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRT 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 452889248 102 KdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIFILFFLSTGLTAsYSFRLFY 179
Cdd:PRK08668 352 G-TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFL-YVFRPLA 427
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
2-213 2.29e-10

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 60.87  E-value: 2.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   2 STLVTAGV-----YLLIRFSPMLYMYNCG-WFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKL 75
Cdd:PRK08168 234 SALLHAGVvnlggFVLIRFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYEL 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  76 AFFHLLAHALFKALLFMCAGS-----KIHNLKDSQNIRFMDSIVnFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMV 150
Cdd:PRK08168 314 ALLHLVAHSLYKAHAFLSASEavrdtRLRRLQGPQSAAGVVSLL-LAPLLSAALVLLLQSLLPLGAWPWWWSAVLALAWA 392

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 452889248 151 CLKWINC--FIFILFFLSTGLTASYSFRLFYYSMSGDNNFYSSFSFNDNGYYISFGMIALLFVAV 213
Cdd:PRK08168 393 PLLWQPCasGASTLSGLGLGLLLVAGLTALAFLAHLLPLGLADAPGPALGLAALAGMAALYLLQA 457
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 4-147 3.15e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 60.37  E-value: 3.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFspMLYMYNC----GWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY------L 73
Cdd:PRK06525 249 MVKVGVYIFARA--IQSMGPIphviGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgsrlaL 326

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 452889248  74 KLAFFHLLAHALFKALLFMCAGSKIHNLkDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK06525 327 EGSIAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-178 6.69e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 56.24  E-value: 6.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   8 GVYLLIRFSPMLY---MYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLM-MSILAMGYLKL--AFFHLL 81
Cdd:COG1008  255 GGYGLLRFALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMV 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  82 AHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVclkWINCFIFI 161
Cdd:COG1008  335 SHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGA---FQVNPWLA 410

                        170
                 ....*....|....*...
gi 452889248 162 LF-FLSTGLTASYSFRLF 178
Cdd:COG1008  411 ILaALGLILTAAYLLWMY 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-189 7.93e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 56.11  E-value: 7.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFSPMLYMYNCGW---FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAF 77
Cdd:PRK07691 251 LTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTesgMIGAI 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  78 FHLLAHALFKALLFMCAGSKIHnLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWiNC 157
Cdd:PRK07691 331 YYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAG-FY 408

                        170       180       190
                 ....*....|....*....|....*....|..
gi 452889248 158 FIFILFFLSTGLTASYSFRLFYYSMSGDNNFY 189
Cdd:PRK07691 409 VSGIIVLLSSLLVLYSVIKIFLKGFWGEPKGY 440
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 24-140 2.21e-08

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 54.83  E-value: 2.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  24 CGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLA--------------FFHLLAHALFKAL 89
Cdd:PRK08042 244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 452889248  90 LFMCAGSKIHNlKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 140
Cdd:PRK08042 324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
8-187 1.19e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 52.64  E-value: 1.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   8 GVYLLIRFSPMLYMYNCG---WFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFFHLL 81
Cdd:PRK12663 252 GIYALIRVFTLLFPQEREllhPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTpagINGAIFYLV 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  82 AHALFKALLFMCAGSKIHnLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLkwINCFIFI 161
Cdd:PRK12663 332 HDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALD--NGAYILL 408

                        170       180
                 ....*....|....*....|....*..
gi 452889248 162 LFFLSTGLTASYS-FRLFYYSMSGDNN 187
Cdd:PRK12663 409 ALMLITSLITMYSlFRIFFLAYWGDKD 435
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 4-96 8.04e-07

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 50.03  E-value: 8.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFSPMlymYNCGW--FLLFIGCMTMYMAGLGANF-EFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHL 80
Cdd:PRK08601 245 LVNAGGIMLTRFSPL---FHDDIaqILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHL 321

                         90
                 ....*....|....*.
gi 452889248  81 LAHALFKALLFMCAGS 96
Cdd:PRK08601 322 ILHGLFKATLFLQSGS 337
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-148 1.30e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.20  E-value: 1.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   4 LVTAGVYLLIRFSPMLYMYNCGW-FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFFH 79
Cdd:PRK12665 251 LTKVGVYAIIRTHTLLFPGGGLDtLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYY 330

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 452889248  80 LLAHALFKALLFMCAGsKIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12665 331 VAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-147 6.62e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 6.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  48 DLKKIIALSTLSQLG-LMMSILAMGYLKL--AFFHLLAHALFKALLFMCAGSKIHNLKdSQNIRFMDSIVNFMPLTSVCF 124
Cdd:PRK05846 300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                         90       100
                 ....*....|....*....|...
gi 452889248 125 NVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK05846 379 LFFAMASLGLPGTSGFVGEFLIL 401
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
3-148 1.05e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.56  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   3 TLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---LKLAFFH 79
Cdd:PRK06277 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTplgIVAGIFH 323

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 452889248  80 LLAHALFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK06277 324 AINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-147 3.69e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.75  E-value: 3.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGW----FLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY---L 73
Cdd:PRK08676 245 SGTVLNIGIYGILRLSALLRQSGAAEqfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTplaL 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 452889248  74 KLAFFHLLAHALFKALLFMCAGSkIHNLKDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK08676 325 FWMLFHMLAHSLVKSGLFFSAGI-LHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFIL 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-143 7.69e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 7.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248   1 SSTLVTAGVYLLIRFSPMLYMYNCGWFLLFIGCMTMYMAGLG-------ANFEFDLKKIIALSTLSQLG---LMMSILAM 70
Cdd:PRK12662 248 SGTSTKVMIYLIIRIVYDVFKANFVFTTLPFNNVFMILAALAivfgsvlAILSKDIKRIFAYSSISHIGyiiLAVSLNTY 327

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 452889248  71 GYLKLAFFHLLAHALFKALLFMCAGSKIHNLkDSQNIRFMDSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 143
Cdd:PRK12662 328 YGLAAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 48-147 9.74e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 9.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  48 DLKKIIALSTLSQLGLMMSILAMGYLkLAFF----HLLAHALFKALLFMCAG--SKIHNLKDSQNIRfmdSIVNFMPLTS 121
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIGGP-LGIFaallHMLNHSLTKSAIFFASGnvLQKYGTRDINVIR---GLLKVSPLTG 379

                         90       100
                 ....*....|....*....|....*.
gi 452889248 122 VCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK06458 380 WGLMLGALAIAGMPPFGVFISEFLIL 405
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 18-224 1.45e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 39.81  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  18 MLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYLKLAFFHLLAHALFKALLFMCAGSK 97
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  98 IHNLKDSQNIRFMDSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIFILFFLSTgLTASYSFRL 177
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSL-ITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 452889248 178 FYYSMSGDNNFYSSFSFNDNGYYISFGMIaLLFVAVFGGSFLSWLIF 224
Cdd:MTH00160 289 SYSSLMLNYNKNKWNLKKKKNKFSLILNF-LSFISLFGLILSSLLFL 334
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-224 3.08e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.94  E-value: 3.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  18 MLYMYNCGWFLLFIGCMTMYMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY-----LKLAFFHLLAHALFKALLFM 92
Cdd:PRK12664 194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFM 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  93 CAGSKIHNLKdSQNIRFMDSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLKWINCFIFILFF--LSTGLT 170
Cdd:PRK12664 274 VADSVINRTR-KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLF 351

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 452889248 171 ASYSFRLFYYSMSGDNNfySSFSFNDNGYYISFGMIALLFVAVFGGSFLSWLIF 224
Cdd:PRK12664 352 ASVGLKFFWYAFISKSK--SKPEAEKVYIGSKLSMIILVLICVVLGMFNSYLLF 403
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 48-143 8.01e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 37.40  E-value: 8.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 452889248  48 DLKKIIALSTLSQLG-LMMSILAMGYL--KLAFFHLLAHALFKALLFMCAGSKIHNLKDSQNIRFMDSIVNFMPLTSVCF 124
Cdd:COG1007  292 NVKRMLAYSSIAHAGyLLLGLAAGTPLgvSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAM 371

                         90
                 ....*....|....*....
gi 452889248 125 NVSSLSLCGMPFLAGFYSK 143
Cdd:COG1007  372 TIFLLSLAGIPPTAGFFGK 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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