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Conserved domains on  [gi|523539995|gb|AGG58763|]
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cytochrome b, partial (mitochondrion) [Gallirallus calayanensis]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-110 1.58e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 245.58  E-value: 1.58e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-110 1.58e-82

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 245.58  E-value: 1.58e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-110 5.45e-48

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 151.75  E-value: 5.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSY--LYK 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                         90       100       110
                 ....*....|....*....|....*....|..
gi 523539995  79 ETWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-110 4.08e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 4.08e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSylYKE- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                         90       100       110
                 ....*....|....*....|....*....|....
gi 523539995  80 ---TWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:COG1290  120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-110 9.78e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 135.59  E-value: 9.78e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995    1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110
                  ....*....|....*....|....*....|..
gi 523539995   79 ETWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-110 1.58e-82

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 245.58  E-value: 1.58e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00074
cytochrome b; Provisional
 1-110 1.21e-76

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 230.72  E-value: 1.21e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00131
cytochrome b; Provisional
 1-110 2.93e-76

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 229.54  E-value: 2.93e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00100
cytochrome b; Provisional
 1-110 4.43e-74

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 224.13  E-value: 4.43e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00156
cytochrome b; Provisional
 1-110 1.56e-71

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 216.57  E-value: 1.56e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00191
cytochrome b; Provisional
 1-110 5.65e-70

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 212.85  E-value: 5.65e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00145
cytochrome b; Provisional
 1-110 1.37e-66

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 204.75  E-value: 1.37e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00034
cytochrome b; Validated
 1-110 1.63e-66

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 204.55  E-value: 1.63e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00016
cytochrome b; Validated
 1-110 1.30e-62

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 194.51  E-value: 1.30e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00224
cytochrome b; Provisional
 1-110 1.60e-53

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 171.26  E-value: 1.60e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 1-110 2.35e-52

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 168.34  E-value: 2.35e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00053
cytochrome b; Provisional
 1-109 1.23e-51

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 166.42  E-value: 1.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100
                 ....*....|....*....|....*....
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFW 109
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-110 5.45e-48

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 151.75  E-value: 5.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSY--LYK 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                         90       100       110
                 ....*....|....*....|....*....|..
gi 523539995  79 ETWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-110 4.08e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 147.24  E-value: 4.08e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSylYKE- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                         90       100       110
                 ....*....|....*....|....*....|....
gi 523539995  80 ---TWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:COG1290  120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-110 9.78e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 135.59  E-value: 9.78e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995    1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110
                  ....*....|....*....|....*....|..
gi 523539995   79 ETWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
CYTB MTH00033
cytochrome b; Provisional
 1-110 1.57e-41

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 140.46  E-value: 1.57e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
CYTB MTH00086
cytochrome b; Provisional
 1-110 1.04e-37

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 129.67  E-value: 1.04e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110
                 ....*....|....*....|....*....|
gi 523539995  81 WNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 2-109 7.15e-27

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 101.21  E-value: 7.15e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   2 GSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100
                 ....*....|....*....|....*...
gi 523539995  82 NTGIILLLTLMATAFVGYVLPWGQMSFW 109
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 1-109 2.36e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 81.68  E-value: 2.36e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 523539995  80 -TWNTGIILLLTLMATAFVGYVLPWGQMSFW 109
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-109 5.54e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.13  E-value: 5.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523539995   1 FGSLLGICLITQILTGLLLAMHYTADTTMAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGFYYGSYLYKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110
                 ....*....|....*....|....*....|.
gi 523539995  80 -TWNTGIILLLTLMATAFVGYVLPWGQMSFW 109
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-110 6.55e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 63.80  E-value: 6.55e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 523539995   56 SFFFICIYLHIGRGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWG 110
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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