|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1-223 |
3.50e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 68.81 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 1 SLKSNNLTYIPPNLSS--TLKELYIYNNMIQVIQEhDLIALHNLEILDLSGNcprcynapypctpcpkgTIEIHPKAFQS 78
Cdd:COG4886 119 DLSGNQLTDLPEELANltNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNN-----------------QLTDLPEELGN 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 79 LKQLKILRLHSNSLQRiLSSWFENTRNLKELDLSQNFLaKEIGDAqfLKLIPSLVELDLSFNfqlqmyspslNLSK--TF 156
Cdd:COG4886 181 LTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQL-TDLPEP--LANLTNLETLDLSNN----------QLTDlpEL 246
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514351508 157 SSLVNLEILRLRGyvfkeLKQENLDPLLHLRNLTVLDLGTNFIKVADLKVFKKFPALKFIDLSVNKI 223
Cdd:COG4886 247 GNLTNLEELDLSN-----NQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308
|
|
| LRR_12 |
pfam18837 |
Leucine-rich repeat; This Pfam entry includes some LRRs that fail to be detected with the ... |
189-218 |
1.28e-08 |
|
Leucine-rich repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model. This entry represents one repeat unit.
Pssm-ID: 408607 Cd Length: 30 Bit Score: 49.65 E-value: 1.28e-08
10 20 30
....*....|....*....|....*....|
gi 514351508 189 LTVLDLGTNFIKVADLKVFKKFPALKFIDL 218
Cdd:pfam18837 1 LQTLHLQMNFINQAQLSIFGAFPGLRFVDL 30
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-224 |
8.10e-08 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 53.31 E-value: 8.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 2 LKSNNLT-YIPPNLSS--TLKELYIYNNMIQVIQEHDLIALHNLEILDLSGNCprcYNAPYPCTPCPKGTI--------- 69
Cdd:PLN00113 315 LFSNNFTgKIPVALTSlpRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN---LTGEIPEGLCSSGNLfklilfsns 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 70 ---EIhPKAFQSLKQLKILRLHSNSLQRILSSWFENTRNLKELDLSQNFLAKEIGDAQFlkLIPSLVELDLS---FNFQL 143
Cdd:PLN00113 392 legEI-PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLArnkFFGGL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 144 QMYSPSLNLSK--------------TFSSLVNLEILRLRGyvfKELKQENLDPLLHLRNLTVLDLGTNFIKVADLKVFKK 209
Cdd:PLN00113 469 PDSFGSKRLENldlsrnqfsgavprKLGSLSELMQLKLSE---NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545
|
250
....*....|....*
gi 514351508 210 FPALKFIDLSVNKIS 224
Cdd:PLN00113 546 MPVLSQLDLSQNQLS 560
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
6-194 |
1.04e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 51.33 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 6 NLTYIPpNLSST--LKELYIYNNMIQVIQehDLIALHNLEILDLSGNCPRCynapypctpcpkgtIEihpkAFQSLKQLK 83
Cdd:cd21340 13 NITKID-NLSLCknLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEK--------------IE----NLENLVNLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 84 ILRLHSNSLQRIlsSWFENTRNLKELDLSQNFLAKE---IGDAQFLKLI-PSLVELDLSFNfQLQMYSPslnlsktFSSL 159
Cdd:cd21340 72 KLYLGGNRISVV--EGLENLTNLEELHIENQRLPPGeklTFDPRSLAALsNSLRVLNISGN-NIDSLEP-------LAPL 141
|
170 180 190
....*....|....*....|....*....|....*
gi 514351508 160 VNLEILRLRGYVFKELKqENLDPLLHLRNLTVLDL 194
Cdd:cd21340 142 RNLEQLDASNNQISDLE-ELLDLLSSWPSLRELDL 175
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1-223 |
3.50e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 68.81 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 1 SLKSNNLTYIPPNLSS--TLKELYIYNNMIQVIQEhDLIALHNLEILDLSGNcprcynapypctpcpkgTIEIHPKAFQS 78
Cdd:COG4886 119 DLSGNQLTDLPEELANltNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNN-----------------QLTDLPEELGN 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 79 LKQLKILRLHSNSLQRiLSSWFENTRNLKELDLSQNFLaKEIGDAqfLKLIPSLVELDLSFNfqlqmyspslNLSK--TF 156
Cdd:COG4886 181 LTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQL-TDLPEP--LANLTNLETLDLSNN----------QLTDlpEL 246
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514351508 157 SSLVNLEILRLRGyvfkeLKQENLDPLLHLRNLTVLDLGTNFIKVADLKVFKKFPALKFIDLSVNKI 223
Cdd:COG4886 247 GNLTNLEELDLSN-----NQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
18-224 |
1.23e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 67.27 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 18 LKELYIYNNMiqviqehDLIALHNLEILDLSGNcprcynapypctpcpkgTIEIHPKAFQSLKQLKILRLHSNSLQRILS 97
Cdd:COG4886 98 LTELDLSGNE-------ELSNLTNLESLDLSGN-----------------QLTDLPEELANLTNLKELDLSNNQLTDLPE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 98 SWFENTrNLKELDLSQNFLaKEIGDAqfLKLIPSLVELDLSFNfQLQmyspslNLSKTFSSLVNLEILRLRGYVFKELKq 177
Cdd:COG4886 154 PLGNLT-NLKSLDLSNNQL-TDLPEE--LGNLTNLKELDLSNN-QIT------DLPEPLGNLTNLEELDLSGNQLTDLP- 221
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 514351508 178 enlDPLLHLRNLTVLDLGTNfiKVADLKVFKKFPALKFIDLSVNKIS 224
Cdd:COG4886 222 ---EPLANLTNLETLDLSNN--QLTDLPELGNLTNLEELDLSNNQLT 263
|
|
| LRR_12 |
pfam18837 |
Leucine-rich repeat; This Pfam entry includes some LRRs that fail to be detected with the ... |
189-218 |
1.28e-08 |
|
Leucine-rich repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model. This entry represents one repeat unit.
Pssm-ID: 408607 Cd Length: 30 Bit Score: 49.65 E-value: 1.28e-08
10 20 30
....*....|....*....|....*....|
gi 514351508 189 LTVLDLGTNFIKVADLKVFKKFPALKFIDL 218
Cdd:pfam18837 1 LQTLHLQMNFINQAQLSIFGAFPGLRFVDL 30
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
2-224 |
8.10e-08 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 53.31 E-value: 8.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 2 LKSNNLT-YIPPNLSS--TLKELYIYNNMIQVIQEHDLIALHNLEILDLSGNCprcYNAPYPCTPCPKGTI--------- 69
Cdd:PLN00113 315 LFSNNFTgKIPVALTSlpRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN---LTGEIPEGLCSSGNLfklilfsns 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 70 ---EIhPKAFQSLKQLKILRLHSNSLQRILSSWFENTRNLKELDLSQNFLAKEIGDAQFlkLIPSLVELDLS---FNFQL 143
Cdd:PLN00113 392 legEI-PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLArnkFFGGL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 144 QMYSPSLNLSK--------------TFSSLVNLEILRLRGyvfKELKQENLDPLLHLRNLTVLDLGTNFIKVADLKVFKK 209
Cdd:PLN00113 469 PDSFGSKRLENldlsrnqfsgavprKLGSLSELMQLKLSE---NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545
|
250
....*....|....*
gi 514351508 210 FPALKFIDLSVNKIS 224
Cdd:PLN00113 546 MPVLSQLDLSQNQLS 560
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
6-194 |
1.04e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 51.33 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 6 NLTYIPpNLSST--LKELYIYNNMIQVIQehDLIALHNLEILDLSGNCPRCynapypctpcpkgtIEihpkAFQSLKQLK 83
Cdd:cd21340 13 NITKID-NLSLCknLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEK--------------IE----NLENLVNLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 84 ILRLHSNSLQRIlsSWFENTRNLKELDLSQNFLAKE---IGDAQFLKLI-PSLVELDLSFNfQLQMYSPslnlsktFSSL 159
Cdd:cd21340 72 KLYLGGNRISVV--EGLENLTNLEELHIENQRLPPGeklTFDPRSLAALsNSLRVLNISGN-NIDSLEP-------LAPL 141
|
170 180 190
....*....|....*....|....*....|....*
gi 514351508 160 VNLEILRLRGYVFKELKqENLDPLLHLRNLTVLDL 194
Cdd:cd21340 142 RNLEQLDASNNQISDLE-ELLDLLSSWPSLRELDL 175
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
81-140 |
6.89e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.59 E-value: 6.89e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 81 QLKILRLHSNSLQRILSSWFENTRNLKELDLSQNFLaKEIGDAQFLKLiPSLVELDLSFN 140
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL-TTLSPGAFSGL-PSLRYLDLSGN 59
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
2-169 |
1.60e-05 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 44.78 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 2 LKSNNLTYIPpNLSST--LKELYIYNNMIQVIQehDLIALHNLEILDLSGNCPRCynapypctpcpkgtIEihpkAFQSL 79
Cdd:cd21340 31 LYDNKITKIE-NLEFLtnLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISV--------------VE----GLENL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 80 KQLKILRLHSNSLQRILSSWFEN------TRNLKELDLSQNflakEIGDAQFLKLIPSLVELDLSFNfQLQMYSpslNLS 153
Cdd:cd21340 90 TNLEELHIENQRLPPGEKLTFDPrslaalSNSLRVLNISGN----NIDSLEPLAPLRNLEQLDASNN-QISDLE---ELL 161
|
170
....*....|....*.
gi 514351508 154 KTFSSLVNLEILRLRG 169
Cdd:cd21340 162 DLLSSWPSLRELDLTG 177
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
1-197 |
2.53e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 45.61 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 1 SLKSNNLT-YIPPNLSS--TLKELYI-YNNMIQVIqEHDLIALHNLEILDLsgncprCYNAPypctpcpKGTIeihPKAF 76
Cdd:PLN00113 194 TLASNQLVgQIPRELGQmkSLKWIYLgYNNLSGEI-PYEIGGLTSLNHLDL------VYNNL-------TGPI---PSSL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 77 QSLKQLKILRLHSNSLQ-RILSSWFeNTRNLKELDLSQNFLAKEIGDaqflkLIPSLVELDLsfnfqLQMYSPSLN--LS 153
Cdd:PLN00113 257 GNLKNLQYLFLYQNKLSgPIPPSIF-SLQKLISLDLSDNSLSGEIPE-----LVIQLQNLEI-----LHLFSNNFTgkIP 325
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 514351508 154 KTFSSLVNLEIL-----RLRGYVFKELKQENldpllhlrNLTVLDLGTN 197
Cdd:PLN00113 326 VALTSLPRLQVLqlwsnKFSGEIPKNLGKHN--------NLTVLDLSTN 366
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
73-238 |
6.24e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 43.50 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 73 PKAFQSLKQLKILRLHSNSLQRILSSWFENTR---NLKELDLSQNFLAKEIGD--AQFLK-LIPSLVELDLSFNfqLQMY 146
Cdd:cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLrssSLQELKLNNNGLGDRGLRllAKGLKdLPPALEKLVLGRN--RLEG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 147 SPSLNLSKTFSSLVNLEILRLR---------------GYVFKELKQENLDP--------------LLHLRNLTVLDLGTN 197
Cdd:cd00116 152 ASCEALAKALRANRDLKELNLAnngigdagiralaegLKANCNLEVLDLNNngltdegasalaetLASLKSLEVLNLGDN 231
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 514351508 198 FIKVADLKVFKK-----FPALKFIDLSVNKISPSSGESNCyRFCPN 238
Cdd:cd00116 232 NLTDAGAAALASallspNISLLTLSLSCNDITDDGAKDLA-EVLAE 276
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
71-114 |
7.78e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.82 E-value: 7.78e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 514351508 71 IHPKAFQSLKQLKILRLHSNSLQRILSSWFENTRNLKELDLSQN 114
Cdd:pfam13855 16 LDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
1-199 |
2.29e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 42.53 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 1 SLKSNNLT-YIPPNLSSTLKELYIYNNMIQVIQEHDLIALHNLEILDLSGNcprcynapypctpCPKGTIeihPKAFQSL 79
Cdd:PLN00113 124 NLSNNNFTgSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-------------VLVGKI---PNSLTNL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 80 KQLKILRLHSNSLQRILSSWFENTRNLKELDLSQNFLAKEIgDAQFLKLIpSLVELDLSFNfqlqmyspslNLSKTF-SS 158
Cdd:PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGGLT-SLNHLDLVYN----------NLTGPIpSS 255
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 514351508 159 LVNLEILRlrgYVFkeLKQENL-----DPLLHLRNLTVLDLGTNFI 199
Cdd:PLN00113 256 LGNLKNLQ---YLF--LYQNKLsgpipPSIFSLQKLISLDLSDNSL 296
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
16-92 |
3.91e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.89 E-value: 3.91e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514351508 16 STLKELYIYNNMIQVIQEHDLIALHNLEILDLSGNCPRCynapypctpcpkgtieIHPKAFQSLKQLKILRLHSNSL 92
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTT----------------LSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
1-50 |
4.07e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.89 E-value: 4.07e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 514351508 1 SLKSNNLTYIPP----NLSStLKELYIYNNMIQVIQEHDLIALHNLEILDLSGN 50
Cdd:pfam13855 7 DLSNNRLTSLDDgafkGLSN-LKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
16-140 |
4.24e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.19 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 16 STLKELYIYNNMIQV--IQE--HDLIALHNLEILDLSGNCPRCYNAPYPCtpcpkgtieihpKAFQSLKQLKILRLHSNS 91
Cdd:cd00116 165 RDLKELNLANNGIGDagIRAlaEGLKANCNLEVLDLNNNGLTDEGASALA------------ETLASLKSLEVLNLGDNN 232
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 92 L-----QRILSSWFENTRNLKELDLSQNflakEIGD------AQFLKLIPSLVELDLSFN 140
Cdd:cd00116 233 LtdagaAALASALLSPNISLLTLSLSCN----DITDdgakdlAEVLAEKESLLELDLRGN 288
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
78-224 |
4.16e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 38.38 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 78 SLKQLKILRLHSNSLQRILSSWFENTRNLKELDLSQNFLAKEIGDAQFLKLIPSLVELDLSFNFQLQMYSPSLNLSKTFS 157
Cdd:COG4886 31 LLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELS 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 514351508 158 SLVNLEILRLRGYVFKELKQEnldpLLHLRNLTVLDLGTNfiKVADL-KVFKKFPALKFIDLSVNKIS 224
Cdd:COG4886 111 NLTNLESLDLSGNQLTDLPEE----LANLTNLKELDLSNN--QLTDLpEPLGNLTNLKSLDLSNNQLT 172
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
35-164 |
4.18e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 38.68 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 35 DLIALHNLEILDLSGNCPrcynapypctpcpKGTIeihPKAFQSLKQLKILRLHSNSLQRILSSWFENTRNLKELDLSQN 114
Cdd:PLN00113 470 DSFGSKRLENLDLSRNQF-------------SGAV---PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 514351508 115 FLAKEIGDAqfLKLIPSLVELDLSFNfQLQMYSPSlNLSKTfSSLVNLEI 164
Cdd:PLN00113 534 QLSGQIPAS--FSEMPVLSQLDLSQN-QLSGEIPK-NLGNV-ESLVQVNI 578
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
104-169 |
5.07e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 34.81 E-value: 5.07e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 514351508 104 RNLKELDLSQNFLaKEIGDAQFLKLiPSLVELDLSFNfQLQMYSPslnlsKTFSSLVNLEILRLRG 169
Cdd:pfam13855 1 PNLRSLDLSNNRL-TSLDDGAFKGL-SNLKVLDLSNN-LLTTLSP-----GAFSGLPSLRYLDLSG 58
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1-197 |
8.19e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 37.22 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 1 SLKSNNLTYIPPNLS--STLKELYIYNNMIQVIQEhdLIALHNLEILDLSGNcprcynapypctpcpkgTIEIHPKAFQs 78
Cdd:COG4886 211 DLSGNQLTDLPEPLAnlTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNN-----------------QLTDLPPLAN- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514351508 79 LKQLKILRLHSNSLQRI-LSSWFENTRNLKELDLSQNFLAKEIGDAQFLKLIPSLVELDLSFNFQLQMYSPSLNLSKTFS 157
Cdd:COG4886 271 LTNLKTLDLSNNQLTDLkLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALL 350
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 514351508 158 SLVNLEILRLRGYVFKELKQENLDPLLHLRNLTVLDLGTN 197
Cdd:COG4886 351 TLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLL 390
|
|
|