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Conserved domains on  [gi|554895339|gb|AGZ05192|]
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integrin b7 subunit, partial [Homo sapiens]

Protein Classification

Integrin_b_cyt domain-containing protein( domain architecture ID 10555266)

Integrin_b_cyt domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 26-65 2.55e-21

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


:

Pssm-ID: 462580  Cd Length: 41  Bit Score: 77.21  E-value: 2.55e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 554895339  26 VEIYDRREYSRFEKEQQQLNWKQDSNPLYKSAITTTINPR 65
Cdd:pfam08725  1 TTIHDRREYAKFEKERKNAKWTTGENPLYKSATTTFENPT 40
 
Name Accession Description Interval E-value
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 26-65 2.55e-21

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


Pssm-ID: 462580  Cd Length: 41  Bit Score: 77.21  E-value: 2.55e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 554895339  26 VEIYDRREYSRFEKEQQQLNWKQDSNPLYKSAITTTINPR 65
Cdd:pfam08725  1 TTIHDRREYAKFEKERKNAKWTTGENPLYKSATTTFENPT 40
 
Name Accession Description Interval E-value
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 26-65 2.55e-21

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


Pssm-ID: 462580  Cd Length: 41  Bit Score: 77.21  E-value: 2.55e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 554895339  26 VEIYDRREYSRFEKEQQQLNWKQDSNPLYKSAITTTINPR 65
Cdd:pfam08725  1 TTIHDRREYAKFEKERKNAKWTTGENPLYKSATTTFENPT 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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