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Conserved domains on  [gi|556926368|gb|AGZ84806|]
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cytochrome b, partial (mitochondrion) [Eulemur rufifrons]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-74 5.51e-53

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 168.28  E-value: 5.51e-53
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00100  63 FSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWG 136
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-74 5.51e-53

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 168.28  E-value: 5.51e-53
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00100  63 FSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWG 136
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-74 1.61e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 103.22  E-value: 1.61e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:cd00284   55 FSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-74 3.92e-26

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 94.37  E-value: 3.92e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556926368    1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:pfam00033  46 FLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-74 9.94e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 96.78  E-value: 9.94e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFT----LteTWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:COG1290   72 FASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWD 147
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-74 5.51e-53

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 168.28  E-value: 5.51e-53
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00100  63 FSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWG 136
CYTB MTH00119
cytochrome b; Provisional
 1-74 2.97e-46

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 150.82  E-value: 2.97e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00119  64 FSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWG 137
CYTB MTH00156
cytochrome b; Provisional
 1-74 1.69e-44

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 145.70  E-value: 1.69e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00156  53 FSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWG 126
CYTB MTH00074
cytochrome b; Provisional
 1-74 1.86e-44

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 145.98  E-value: 1.86e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00074  64 FSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWG 137
CYTB MTH00131
cytochrome b; Provisional
 1-74 3.52e-43

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 142.87  E-value: 3.52e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00131  63 FSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWG 136
CYTB MTH00191
cytochrome b; Provisional
 1-74 7.68e-42

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 138.89  E-value: 7.68e-42
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00191  60 FSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWG 133
CYTB MTH00145
cytochrome b; Provisional
 1-74 2.29e-40

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 135.42  E-value: 2.29e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00145  64 FSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWG 137
CYTB MTH00016
cytochrome b; Validated
 1-74 1.63e-39

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 133.26  E-value: 1.63e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00016  64 FSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWG 137
CYTB MTH00034
cytochrome b; Validated
 1-74 7.65e-39

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 131.37  E-value: 7.65e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00034  63 FSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWG 136
CYTB MTH00224
cytochrome b; Provisional
 1-74 1.71e-35

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 122.72  E-value: 1.71e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00224  64 FSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWG 137
CYTB MTH00022
cytochrome b; Validated
 1-74 2.27e-34

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 119.81  E-value: 2.27e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00022  62 FASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWG 135
CYTB MTH00053
cytochrome b; Provisional
 1-74 2.29e-32

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 114.42  E-value: 2.29e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00053  64 FSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWG 137
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-74 1.61e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 103.22  E-value: 1.61e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:cd00284   55 FSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
CYTB MTH00033
cytochrome b; Provisional
 1-74 3.94e-27

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 100.78  E-value: 3.94e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00033  60 FSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWG 133
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-74 3.92e-26

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 94.37  E-value: 3.92e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556926368    1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSF--TLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:pfam00033  46 FLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-74 9.94e-26

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 96.78  E-value: 9.94e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFT----LteTWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:COG1290   72 FASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWD 147
CYTB MTH00086
cytochrome b; Provisional
 1-74 5.11e-21

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 83.84  E-value: 5.11e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:MTH00086  52 FSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWA 125
CYTB MTH00046
cytochrome b; Validated
 1-73 6.74e-17

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 72.32  E-value: 6.74e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTETWNIGIILLFTVMATAFMGYVLPW 73
Cdd:MTH00046  54 FFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPW 126
PRK03735 PRK03735
cytochrome b6; Provisional
 1-73 1.12e-12

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 59.73  E-value: 1.12e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTE--TWNIGIILLFTVMATAFMGYVLPW 73
Cdd:PRK03735  74 YESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPW 148
petB CHL00070
cytochrome b6
 1-73 1.85e-10

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 53.96  E-value: 1.85e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556926368   1 FSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLTE--TWNIGIILLFTVMATAFMGYVLPW 73
Cdd:CHL00070  66 FASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPW 140
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
26-74 1.14e-07

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 45.70  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 556926368   26 SMFFLCLFIHIGRGLYYGSFTLTE--TWNIGIILLFTVMATAFMGYVLPWG 74
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDD 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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