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Conserved domains on  [gi|575526899|gb|AHG99289|]
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coat protein, partial [Pepper vein yellows virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Luteo_coat super family cl03007
Luteovirus coat protein;
1-116 1.50e-46

Luteovirus coat protein;


The actual alignment was detected with superfamily member pfam00894:

Pssm-ID: 279266  Cd Length: 138  Bit Score: 146.62  E-value: 1.50e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575526899    1 SLSESIALSGGVLKAYHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQINGVEW 80
Cdd:pfam00894  23 SLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLNTFNIRKNGSKTFGREIINGQEW 102
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 575526899   81 HDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQLHNP 116
Cdd:pfam00894 103 YESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMNA 138
 
Name Accession Description Interval E-value
Luteo_coat pfam00894
Luteovirus coat protein;
1-116 1.50e-46

Luteovirus coat protein;


Pssm-ID: 279266  Cd Length: 138  Bit Score: 146.62  E-value: 1.50e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575526899    1 SLSESIALSGGVLKAYHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQINGVEW 80
Cdd:pfam00894  23 SLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLNTFNIRKNGSKTFGREIINGQEW 102
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 575526899   81 HDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQLHNP 116
Cdd:pfam00894 103 YESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMNA 138
 
Name Accession Description Interval E-value
Luteo_coat pfam00894
Luteovirus coat protein;
1-116 1.50e-46

Luteovirus coat protein;


Pssm-ID: 279266  Cd Length: 138  Bit Score: 146.62  E-value: 1.50e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 575526899    1 SLSESIALSGGVLKAYHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQINGVEW 80
Cdd:pfam00894  23 SLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLNTFNIRKNGSKTFGREIINGQEW 102
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 575526899   81 HDTSEDQFRLLYKGNGTKNVAAGFFQIRFTVQLHNP 116
Cdd:pfam00894 103 YESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMNA 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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