AV1 [Sweet potato leaf curl Georgia virus]
Protein Classification
capsid/nuclear shuttle family protein( domain architecture ID 10467201)
geminivirus capsid/nuclear shuttle family protein such as capsid (or coat) protein that encapsidates the viral DNA into characteristic twinned ('geminate') particles, and nuclear shuttle protein (NSP) that binds to the genomic viral ssDNA and shuttles it into and out of the cell nucleus
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| Gemini_coat | pfam00844 | Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 ... |
20-254 | 1.86e-80 | |||||
Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 N-terminal amino acids of the maize streak virus coat protein bind DNA non- specifically. This family also includes various geminivirus movement proteins that are nuclear export factors or shuttles. One member BR1 facilitates the export of both ds and ss DNA form the nucleus. : Pssm-ID: 307130 Cd Length: 244 Bit Score: 241.82 E-value: 1.86e-80
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| Name | Accession | Description | Interval | E-value | |||||
| Gemini_coat | pfam00844 | Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 ... |
20-254 | 1.86e-80 | |||||
Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 N-terminal amino acids of the maize streak virus coat protein bind DNA non- specifically. This family also includes various geminivirus movement proteins that are nuclear export factors or shuttles. One member BR1 facilitates the export of both ds and ss DNA form the nucleus. Pssm-ID: 307130 Cd Length: 244 Bit Score: 241.82 E-value: 1.86e-80
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| Name | Accession | Description | Interval | E-value | |||||
| Gemini_coat | pfam00844 | Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 ... |
20-254 | 1.86e-80 | |||||
Geminivirus coat protein/nuclear export factor BR1 family; It has been shown that the 104 N-terminal amino acids of the maize streak virus coat protein bind DNA non- specifically. This family also includes various geminivirus movement proteins that are nuclear export factors or shuttles. One member BR1 facilitates the export of both ds and ss DNA form the nucleus. Pssm-ID: 307130 Cd Length: 244 Bit Score: 241.82 E-value: 1.86e-80
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| Blast search parameters | ||||
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