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Conserved domains on  [gi|641389317|gb|AIA58677|]
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AC5 [Solanum mosaic Bolivia virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Gemini_AC4_5 super family cl04766
Geminivirus AC4/5 conserved region;
51-83 1.47e-07

Geminivirus AC4/5 conserved region;


The actual alignment was detected with superfamily member pfam04807:

Pssm-ID: 147122  Cd Length: 33  Bit Score: 43.94  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 641389317   51 EIVLHCSSARLIVKHVEHLAKIHRCTIGSSISH 83
Cdd:pfam04807   1 MIVLHRRSAGLIVKHVKHLTKIHWSSIRSTVTN 33
 
Name Accession Description Interval E-value
Gemini_AC4_5 pfam04807
Geminivirus AC4/5 conserved region;
51-83 1.47e-07

Geminivirus AC4/5 conserved region;


Pssm-ID: 147122  Cd Length: 33  Bit Score: 43.94  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 641389317   51 EIVLHCSSARLIVKHVEHLAKIHRCTIGSSISH 83
Cdd:pfam04807   1 MIVLHRRSAGLIVKHVKHLTKIHWSSIRSTVTN 33
 
Name Accession Description Interval E-value
Gemini_AC4_5 pfam04807
Geminivirus AC4/5 conserved region;
51-83 1.47e-07

Geminivirus AC4/5 conserved region;


Pssm-ID: 147122  Cd Length: 33  Bit Score: 43.94  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 641389317   51 EIVLHCSSARLIVKHVEHLAKIHRCTIGSSISH 83
Cdd:pfam04807   1 MIVLHRRSAGLIVKHVKHLTKIHWSSIRSTVTN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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