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Conserved domains on  [gi|663513259|gb|AIF03803|]
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putative RNA methylase [uncultured marine group II/III euryarchaeote KM3_169_H09]

Protein Classification

METTL5 family protein( domain architecture ID 10006292)

METTL5 family protein similar to Homo sapiens methyltransferase-like protein 5 that is a catalytic subunit of a heterodimer with TRMT112, which specifically methylates the 6th position of adenine in position 1832 of 18S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
1-193 2.40e-51

Predicted RNA methylase [General function prediction only];


:

Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 163.92  E-value: 2.40e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   1 MLLSSLPGHPCSDVGLEQYSTSGDLAAAWLAQIAAFGDLDaDSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVA 80
Cdd:COG2263    6 IILEKLPGFSNPKVELEQYPTPAELAAELLHLAYLRGDIE-GKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  81 FEAVEQtgVGDIAEVMCKVVNENLDIAGVDLVISNPPWGSQTPKSDRPFLEAMLRSGANSHLMHSAQAT-HIEPLFEAAG 159
Cdd:COG2263   85 RENAER--LGVRVDFIRADVTRIPLGGSVDTVVMNPPFGAQRRHADRPFLEKALEIAAVIYSIHNAGSLdFVERFAADRG 162

                        170       180       190
                 ....*....|....*....|....*....|....
gi 663513259 160 WTVERYWEADFALPAAYAHHSSRQGKTRVAFWRL 193
Cdd:COG2263  163 GEITHVFRAEFPIPRTFEFHRKRRRRIEVEVYRI 196
 
Name Accession Description Interval E-value
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
1-193 2.40e-51

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 163.92  E-value: 2.40e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   1 MLLSSLPGHPCSDVGLEQYSTSGDLAAAWLAQIAAFGDLDaDSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVA 80
Cdd:COG2263    6 IILEKLPGFSNPKVELEQYPTPAELAAELLHLAYLRGDIE-GKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  81 FEAVEQtgVGDIAEVMCKVVNENLDIAGVDLVISNPPWGSQTPKSDRPFLEAMLRSGANSHLMHSAQAT-HIEPLFEAAG 159
Cdd:COG2263   85 RENAER--LGVRVDFIRADVTRIPLGGSVDTVVMNPPFGAQRRHADRPFLEKALEIAAVIYSIHNAGSLdFVERFAADRG 162

                        170       180       190
                 ....*....|....*....|....*....|....
gi 663513259 160 WTVERYWEADFALPAAYAHHSSRQGKTRVAFWRL 193
Cdd:COG2263  163 GEITHVFRAEFPIPRTFEFHRKRRRRIEVEVYRI 196
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 38-142 2.30e-07

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 48.74  E-value: 2.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   38 DLDADSVVADLGAGNGILGIGAALMGaGQVILVECDEAACAVAF--EAVEQTGVgDIAEVMCKVVNENLDIAGVDLVISN 115
Cdd:pfam05175  28 PKDLSGKVLDLGCGAGVLGAALAKES-PDAELTMVDINARALESarENLAANGL-ENGEVVASDVYSGVEDGKFDLIISN 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 663513259  116 PPW--GSQTPKS--DRPFLEA--MLRSG------ANSHL 142
Cdd:pfam05175 106 PPFhaGLATTYNvaQRFIADAkrHLRPGgelwivANRFL 144
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
41-115 1.33e-06

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 47.07  E-value: 1.33e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663513259  41 ADSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVMCkvvnenlDIAGVDLVISN 115
Cdd:PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------GDLKADVIVAN 186
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 45-135 7.07e-06

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 43.19  E-value: 7.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  45 VADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTG-------VGDIAEVMCKVVNEnldiagVDLVISNPP 117
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLadnvevlKGDAEELPPEADES------FDVIISDPP 75

                         90
                 ....*....|....*...
gi 663513259 118 WGSQtPKSDRPFLEAMLR 135
Cdd:cd02440   76 LHHL-VEDLARFLEEARR 92
TIGR00095 TIGR00095
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ...
 36-164 1.04e-04

16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188022 [Multi-domain]  Cd Length: 190  Bit Score: 41.24  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   36 FGDLDaDSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVA---FEAVEQTgvGDIAEVMCKVVNENLDIA----G 108
Cdd:TIGR00095  46 RPDIV-GAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTLkenLSTLKKS--GEQATVLNDAVRALLFLAkkqtP 122

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 663513259  109 VDLVISNPPWGSQTPKsdrPFLEAMLRSG--ANSHLMHSAQATHIEPLFEAAGWTVER 164
Cdd:TIGR00095 123 FDIIYLDPPFNRGLLE---ALLELLGENKwlNPKGLIVVEYDRENELPTVPETWSLLR 177
 
Name Accession Description Interval E-value
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
1-193 2.40e-51

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 163.92  E-value: 2.40e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   1 MLLSSLPGHPCSDVGLEQYSTSGDLAAAWLAQIAAFGDLDaDSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVA 80
Cdd:COG2263    6 IILEKLPGFSNPKVELEQYPTPAELAAELLHLAYLRGDIE-GKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  81 FEAVEQtgVGDIAEVMCKVVNENLDIAGVDLVISNPPWGSQTPKSDRPFLEAMLRSGANSHLMHSAQAT-HIEPLFEAAG 159
Cdd:COG2263   85 RENAER--LGVRVDFIRADVTRIPLGGSVDTVVMNPPFGAQRRHADRPFLEKALEIAAVIYSIHNAGSLdFVERFAADRG 162

                        170       180       190
                 ....*....|....*....|....*....|....
gi 663513259 160 WTVERYWEADFALPAAYAHHSSRQGKTRVAFWRL 193
Cdd:COG2263  163 GEITHVFRAEFPIPRTFEFHRKRRRRIEVEVYRI 196
RsmC COG2813
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 38-142 4.57e-10

16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 442062 [Multi-domain]  Cd Length: 191  Bit Score: 56.35  E-value: 4.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  38 DLDADSVVADLGAGNGILGIGAALMGAG-QVILVECDEAACAVAFEAVEQTGVGDiAEVMCKVVNENLDIAGVDLVISNP 116
Cdd:COG2813   46 PEPLGGRVLDLGCGYGVIGLALAKRNPEaRVTLVDVNARAVELARANAAANGLEN-VEVLWSDGLSGVPDGSFDLILSNP 124

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 663513259 117 PW--GSQTPKS--DRPFLEA--MLRSG------ANSHL 142
Cdd:COG2813  125 PFhaGRAVDKEvaHALIADAarHLRPGgelwlvANRHL 162
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 45-127 5.66e-10

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 56.69  E-value: 5.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  45 VADLGAGNGILGIG-AALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVMC---KVVNENLDIAGVDLVISNPPW-- 118
Cdd:COG4123   41 VLDLGTGTGVIALMlAQRSPGARITGVEIQPEAAELARRNVALNGLEDRITVIHgdlKEFAAELPPGSFDLVVSNPPYfk 120

                         90
                 ....*....|..
gi 663513259 119 ---GSQTPKSDR 127
Cdd:COG4123  121 agsGRKSPDEAR 132
PrmA COG2264
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
41-115 2.15e-09

Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441865 [Multi-domain]  Cd Length: 284  Bit Score: 55.56  E-value: 2.15e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663513259  41 ADSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVmckVVNENLDIAGVDLVISN 115
Cdd:COG2264  148 PGKTVLDVGCGSGILAIAAAKLGAKRVLAVDIDPVAVEAARENAELNGVEDRIEV---VLGDLLEDGPYDLVVAN 219
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
42-114 2.64e-08

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 51.96  E-value: 2.64e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 663513259  42 DSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVMCKVVNENLDIAGVDLVIS 114
Cdd:COG4076   36 GDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAANGLSDRITVINADATDLDLPEKADVIIS 108
HemK COG2890
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ...
 40-117 4.42e-08

Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442135 [Multi-domain]  Cd Length: 282  Bit Score: 51.69  E-value: 4.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  40 DADSVVADLGAGNGILGIGAALMGAG-QVILVECDEAACAVAFEAVEQTGVGDIAEVMCKVVNENLDIAG-VDLVISNPP 117
Cdd:COG2890  111 GAPPRVLDLGTGSGAIALALAKERPDaRVTAVDISPDALAVARRNAERLGLEDRVRFLQGDLFEPLPGDGrFDLIVSNPP 190
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 38-142 2.30e-07

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 48.74  E-value: 2.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   38 DLDADSVVADLGAGNGILGIGAALMGaGQVILVECDEAACAVAF--EAVEQTGVgDIAEVMCKVVNENLDIAGVDLVISN 115
Cdd:pfam05175  28 PKDLSGKVLDLGCGAGVLGAALAKES-PDAELTMVDINARALESarENLAANGL-ENGEVVASDVYSGVEDGKFDLIISN 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 663513259  116 PPW--GSQTPKS--DRPFLEA--MLRSG------ANSHL 142
Cdd:pfam05175 106 PPFhaGLATTYNvaQRFIADAkrHLRPGgelwivANRFL 144
PrmA pfam06325
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal ...
 45-115 4.86e-07

Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.


Pssm-ID: 428888 [Multi-domain]  Cd Length: 294  Bit Score: 48.80  E-value: 4.86e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663513259   45 VADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVMckvVNENLDIAGVDLVISN 115
Cdd:pfam06325 165 VLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEARLEVY---LPGDLPKEKADVVVAN 232
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
41-115 1.33e-06

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 47.07  E-value: 1.33e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663513259  41 ADSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVMCkvvnenlDIAGVDLVISN 115
Cdd:PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------GDLKADVIVAN 186
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 45-135 7.07e-06

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 43.19  E-value: 7.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  45 VADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTG-------VGDIAEVMCKVVNEnldiagVDLVISNPP 117
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLadnvevlKGDAEELPPEADES------FDVIISDPP 75

                         90
                 ....*....|....*...
gi 663513259 118 WGSQtPKSDRPFLEAMLR 135
Cdd:cd02440   76 LHHL-VEDLARFLEEARR 92
TIGR00095 TIGR00095
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ...
 36-164 1.04e-04

16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188022 [Multi-domain]  Cd Length: 190  Bit Score: 41.24  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   36 FGDLDaDSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVA---FEAVEQTgvGDIAEVMCKVVNENLDIA----G 108
Cdd:TIGR00095  46 RPDIV-GAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTLkenLSTLKKS--GEQATVLNDAVRALLFLAkkqtP 122

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 663513259  109 VDLVISNPPWGSQTPKsdrPFLEAMLRSG--ANSHLMHSAQATHIEPLFEAAGWTVER 164
Cdd:TIGR00095 123 FDIIYLDPPFNRGLLE---ALLELLGENKwlNPKGLIVVEYDRENELPTVPETWSLLR 177
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 38-117 1.11e-04

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 41.70  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  38 DLDADSVVADLGAGNGILGIGAALmGAGQVILVECDEAACAVAFEAVEQTGVGDiAEVMC----KVVNENLDIAGVDLVI 113
Cdd:COG2265  230 DLTGGERVLDLYCGVGTFALPLAR-RAKKVIGVEIVPEAVEDARENARLNGLKN-VEFVAgdleEVLPELLWGGRPDVVV 307


                 ....
gi 663513259 114 SNPP 117
Cdd:COG2265  308 LDPP 311
PRK14967 PRK14967
putative methyltransferase; Provisional
 38-118 1.31e-04

putative methyltransferase; Provisional


Pssm-ID: 184931 [Multi-domain]  Cd Length: 223  Bit Score: 41.19  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  38 DLDADSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGV------GDIAEVmckvvnenLDIAGVDL 111
Cdd:PRK14967  33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVdvdvrrGDWARA--------VEFRPFDV 104


                 ....*..
gi 663513259 112 VISNPPW 118
Cdd:PRK14967 105 VVSNPPY 111
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 45-135 3.89e-04

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 38.31  E-value: 3.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   45 VADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTG------VGDIaevmckvvnENLDIAG--VDLVISNP 116
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGlnvefvQGDA---------EDLPFPDgsFDLVVSSG 71

                          90
                  ....*....|....*....
gi 663513259  117 PWGSQTPKSDRPFLEAMLR 135
Cdd:pfam13649  72 VLHHLPDPDLEAALREIAR 90
Cons_hypoth95 pfam03602
Conserved hypothetical protein 95;
42-96 2.11e-03

Conserved hypothetical protein 95;


Pssm-ID: 427391 [Multi-domain]  Cd Length: 179  Bit Score: 37.22  E-value: 2.11e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 663513259   42 DSVVADLGAGNGILGIGAALMGAGQVILVECDEAACAVAFEAVEQTGVGDIAEVM 96
Cdd:pfam03602  42 GARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQILKENLQLLGLPGAVLVM 96
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 39-115 2.82e-03

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 36.53  E-value: 2.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259  39 LDADSVVADLGAGNGILGIGAALMGAgQVILVECDEAACAVAFEAVEQTGV----GDIaevmckvvnENLDIAG--VDLV 112
Cdd:COG2227   22 LPAGGRVLDVGCGTGRLALALARRGA-DVTGVDISPEALEIARERAAELNVdfvqGDL---------EDLPLEDgsFDLV 91


                 ...
gi 663513259 113 ISN 115
Cdd:COG2227   92 ICS 94
UPF0020 pfam01170
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ...
 38-119 5.34e-03

Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.


Pssm-ID: 395932 [Multi-domain]  Cd Length: 184  Bit Score: 36.18  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663513259   38 DLDADSVVADLGAGNGILGIGAALMGA------------GQVILVECDEAACAVAFEAVEQTGVGDIAEVMC-KVVNENL 104
Cdd:pfam01170  25 GWKPGDPLLDPMCGSGTILIEAALMGAniapgkfdarvrAPLYGSDIDRRMVQGARLNAENAGVGDLIEFVQaDAADLPL 104

                          90
                  ....*....|....*
gi 663513259  105 DIAGVDLVISNPPWG 119
Cdd:pfam01170 105 LEGSVDVIVTNPPYG 119
PRK07402 PRK07402
precorrin-6Y C5,15-methyltransferase subunit CbiT;
39-77 6.11e-03

precorrin-6Y C5,15-methyltransferase subunit CbiT;


Pssm-ID: 180961  Cd Length: 196  Bit Score: 36.13  E-value: 6.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 663513259  39 LDADSVVADLGAGNGILGIGAALM-GAGQVILVECDEAAC 77
Cdd:PRK07402  38 LEPDSVLWDIGAGTGTIPVEAGLLcPKGRVIAIERDEEVV 77
PRK14968 PRK14968
putative methyltransferase; Provisional
 45-117 7.47e-03

putative methyltransferase; Provisional


Pssm-ID: 237872 [Multi-domain]  Cd Length: 188  Bit Score: 36.03  E-value: 7.47e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 663513259  45 VADLGAGNGILGIGAALMGAgQVILVECDEAACAVAFEAVEqtgVGDIAEVMCKVVN----ENLDIAGVDLVISNPP 117
Cdd:PRK14968  27 VLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAK---LNNIRNNGVEVIRsdlfEPFRGDKFDVILFNPP 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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