NCBI Conserved Domain Search

Conserved domains on [gi|663513422|gb|AIF03961|]

View

hypothetical protein [uncultured marine group II/III euryarchaeote KM3_16_D12]

Protein Classification

SAP domain-containing protein( domain architecture ID 10488483)

SAP (SAF-A/B, Acinus and PIAS) domain-containing protein may bind DNA or RNA and act as a transcriptional regulator

CATH: 1.10.720.30

Gene Ontology: GO:0003676|GO:0003700

PubMed: 10694879

SCOP: 4002795

Graphical summary

Zoom to residue level

show extra options »

Show site features Horizontal zoom: ×

List of domain hits

Name

Accession

Description

Interval

E-value

SAP

pfam02037

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...

49-80

3.98e-06

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.

Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 39.31 E-value: 3.98e-06

                         10        20        30
                 ....*....|....*....|....*....|..
gi 663513422  49 LNKMKKADLVELAEGRGVDSEGKKDDIIERLL 80
Cdd:pfam02037  1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQ 32

Name

Accession

Description

Interval

E-value

SAP

pfam02037

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...

49-80

3.98e-06

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.

Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 39.31 E-value: 3.98e-06

                         10        20        30
                 ....*....|....*....|....*....|..
gi 663513422  49 LNKMKKADLVELAEGRGVDSEGKKDDIIERLL 80
Cdd:pfam02037  1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQ 32

SAP

smart00513

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;

49-81

9.36e-05

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;

Pssm-ID: 128789 [Multi-domain] Cd Length: 35 Bit Score: 35.93 E-value: 9.36e-05

                          10        20        30
                  ....*....|....*....|....*....|...
gi 663513422   49 LNKMKKADLVELAEGRGVDSEGKKDDIIERLLA 81
Cdd:smart00513  1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLE 33

Name

Accession

Description

Interval

E-value

SAP

pfam02037

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...

49-80

3.98e-06

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.

Pssm-ID: 460424 [Multi-domain] Cd Length: 35 Bit Score: 39.31 E-value: 3.98e-06

                         10        20        30
                 ....*....|....*....|....*....|..
gi 663513422  49 LNKMKKADLVELAEGRGVDSEGKKDDIIERLL 80
Cdd:pfam02037  1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQ 32

SAP

smart00513

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;

49-81

9.36e-05

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;

Pssm-ID: 128789 [Multi-domain] Cd Length: 35 Bit Score: 35.93 E-value: 9.36e-05

                          10        20        30
                  ....*....|....*....|....*....|...
gi 663513422   49 LNKMKKADLVELAEGRGVDSEGKKDDIIERLLA 81
Cdd:smart00513  1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLE 33

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01