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Conserved domains on  [gi|674101025|gb|AIK97519|]
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NADH dehydroxygenase subunit 5, partial (mitochondrion) [Trimerotropis latifasciata]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 1.52e-118

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 352.91  E-value: 1.52e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 1.52e-118

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 352.91  E-value: 1.52e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.61e-41

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 151.84  E-value: 1.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSdSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATG-TRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101025 160 NFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 3.05e-39

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 145.50  E-value: 3.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025    3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101025  163 PSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPLYLSFLTLFVVIIGFYLGYFI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.73e-37

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 131.90  E-value: 1.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  146 YSFRLFYYSMIGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  226 FISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLY 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101025  306 DYNFSVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-318 1.52e-118

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 352.91  E-value: 1.52e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00165 246 LLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDI 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00165 326 RFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFN 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00165 406 LKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLK 485

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00165 486 NYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLL 563
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-318 1.36e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 249.56  E-value: 1.36e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00209 242 LLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDI 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00209 322 RMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNS 401

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDfdyfYGLFSLN 240
Cdd:MTH00209 402 SKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLK----KNFFLIK 477

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00209 478 GYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMML 555
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-318 1.90e-76

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 243.98  E-value: 1.90e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00151 243 LLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDI 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00151 323 RLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMK 402

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00151 403 SSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSGFSSSKMVKL 482

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 flsfVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00151 483 ----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLILL 556
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-294 1.75e-73

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 236.59  E-value: 1.75e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00207 246 LLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00207 326 RTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNS 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00207 406 SSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTPLLIN 485

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFF 294
Cdd:MTH00207 486 NPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMF 539
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-318 1.14e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 190.16  E-value: 1.14e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00211 271 VLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDI 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00211 351 RKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPR 430

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-LPLYLSFLTLFVVIIGFYLGyfisdFDYFYGLFSL 239
Cdd:MTH00211 431 FLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLG-----LELVNLTHKQ 505

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 240 NFLSFVSFVGSMWFMPFLSTNYISYLPLKVG-YDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00211 506 LKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLL 585
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-318 2.64e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 184.40  E-value: 2.64e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   2 LLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIR 81
Cdd:MTH00208 304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNF 161
Cdd:MTH00208 384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 162 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyVIVLPLYLSFLTLFVVIIGFYLGYFISdfdYFYGLFSLNF 241
Cdd:MTH00208 464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSFL---LSLSSNPINS 539

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101025 242 LSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00208 540 NFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTL 616
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-163 8.05e-50

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 174.58  E-value: 8.05e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   2 LLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIR 81
Cdd:MTH00004 277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNF 161
Cdd:MTH00004 357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436


                 ..
gi 674101025 162 YP 163
Cdd:MTH00004 437 PP 438
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-318 7.48e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 168.93  E-value: 7.48e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   2 LLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIR 81
Cdd:MTH00066 275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNF 161
Cdd:MTH00066 355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 162 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPLYLSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN 240
Cdd:MTH00066 435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKM 514

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101025 241 FlsfvSFVGSMWFMPFLSTNYISYLPLKVGYD-SSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00066 515 H----SFSNLLAFFPTIIHRLSPKTNLNSGQNiATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 2-223 8.19e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 160.79  E-value: 8.19e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   2 LLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIR 81
Cdd:MTH00108 278 LCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIR 357

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNF 161
Cdd:MTH00108 358 KMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRF 437

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101025 162 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYV-IVLPLYLSFLTLFVVIIGFYL 223
Cdd:MTH00108 438 PPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILGFIL 500
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-227 1.61e-41

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 151.84  E-value: 1.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSdSQDI 80
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATG-TRDI 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDN 159
Cdd:COG1009  357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101025 160 NFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPLYLSFLTLFVVIIGFYLGYFI 227
Cdd:COG1009  437 RPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-155 6.31e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 150.37  E-value: 6.31e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   2 LLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIR 81
Cdd:MTH00137 283 LCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 362

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  82 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRL-FYYSM 155
Cdd:MTH00137 363 KMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-227 3.05e-39

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 145.50  E-value: 3.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025    3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRF 82
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNFY 162
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101025  163 PSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPLYLSFLTLFVVIIGFYLGYFI 227
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 3-305 1.34e-38

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 144.06  E-value: 1.34e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRF 82
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNFY 162
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 163 PSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI-------FPVPYVIV--LPLYLSFL-TLFVVIIGFYLGYFISDF 230
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGgIGLVIILYFYSSKTFRVP 518

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101025 231 DYFYGLFSLNFLsfvsfvGSMWFMPFLSTNYISYLPLKVGYD-SSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLY 305
Cdd:MTH00020 519 FSFIGRNSYTFL------GSAWQFNYILNYFLIKKIWKGGHLiSYRTIDKGVLELVGPKGISNFLIILTQGLSSLQ 588
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 4-227 7.55e-38

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 141.83  E-value: 7.55e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   4 IGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRFM 83
Cdd:PRK06590 287 VGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKM 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  84 GSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEViCLSWINFLIFFLYFISTGLTASYSFRLFYYSMIG---DNN 160
Cdd:PRK06590 367 GGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEA-AFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGkekEKI 445

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101025 161 FYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFPVPYVIV-----LPLYLSFLTLFVVIIGFYLGYFI 227
Cdd:PRK06590 446 HHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALLPLVVALAGIALAWLL 518
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 146-318 1.73e-37

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 131.90  E-value: 1.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  146 YSFRLFYYSMIGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLGY 225
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  226 FISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKVGYDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLY 305
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 674101025  306 DYNFSVYLLTFIF 318
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-318 2.47e-37

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 140.53  E-value: 2.47e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRF 82
Cdd:MTH00210 280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  83 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNFY 162
Cdd:MTH00210 360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 163 PSYFF--DDKSYFISFGMIGLLFVAVFGGS-----FLSWLIFPV--PYVIVLPLYLSFLTLFVVIIGFYLGYFIsDFDYF 233
Cdd:MTH00210 440 KEVFIgvHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPIvpNSIKMIPLLFSLLGALLAFVIYNSMVFL-IKISR 518

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 234 YGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKVGYD-SSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVY 312
Cdd:MTH00210 519 RGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLiTYRIIDRGLLEIIGPRGISKVLIKLTQKISNLQSGMVFNY 598


                 ....*.
gi 674101025 313 LLTFIF 318
Cdd:MTH00210 599 ALIMII 604
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-158 1.25e-27

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 112.81  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSD------ 76
Cdd:PRK07376 296 WTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  77 --SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSwiNFLIFFLYFISTGLTASYSFRLFYYS 154
Cdd:PRK07376 376 vlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLT 453


                 ....
gi 674101025 155 MIGD 158
Cdd:PRK07376 454 FEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-139 2.65e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 2.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025    1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGSMIHNLSDS 77
Cdd:pfam00361 150 LLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHT 229

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 674101025   78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFIS 139
Cdd:pfam00361 230 RNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 3-176 3.18e-24

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 103.05  E-value: 3.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNL-------- 74
Cdd:CHL00025 296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  75 SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDlilEVICLSWINFLIF-FLYFISTGLTASYSFRLFYY 153
Cdd:CHL00025 376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                        170       180
                 ....*....|....*....|....*.
gi 674101025 154 SMIGD---NNFYPSYFFDDKSYFISF 176
Cdd:CHL00025 453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 3-317 8.04e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 101.96  E-value: 8.04e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSM-GYYDLAFFHLLTHALFSALLFMCAGSMIHNLS-DSQDI 80
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVI------------CLSWINFLI---------------- 132
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTysgrnmgipfgsSLLKIQGDIgikkddrgsiggpegy 453

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 133 --------FFLYFISTGLTASYSFRLFYYSMIGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV----- 199
Cdd:MTH00032 454 psrgsafaFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 200 ------PYVIVLPlylSFLTLFVVIIGFYLGYFISDFDYFYGLFSLN---FLSFVSFVGSMWFMPFLSTNYISYLPLKVG 270
Cdd:MTH00032 534 ehpivpPLIKVMP---TLMGLFGMGLCLWAQKGTREGELYWGFDPIGpsfLLSIYSFLGGAWQGDHLINKLVAIPLFSFG 610

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 674101025 271 -YDSSKSLDCGWGELLGGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFI 317
Cdd:MTH00032 611 hWGIYKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLL 658
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-153 6.24e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.44  E-value: 6.24e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---AFFHLLTHALFSALLFMCAGSMIHNLsDS 77
Cdd:COG0651  275 LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERAT-GT 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVIcLSWINFLIFFLYFISTGLTASYSFRLFYY 153
Cdd:COG0651  354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-318 5.52e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 84.20  E-value: 5.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00095 230 MLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDG 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNN 160
Cdd:MTH00095 310 RNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSK 389

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025 161 FYPSYFFDDKSYFISFGMIgllfvaVFGGSFLSWLIFPVPYVIVLPLYLSFLTLFVVIIGFYLgyfISDFDYFYGLFSLN 240
Cdd:MTH00095 390 VVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIML---FSFFFFKLLFKELK 460

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025 241 FLSFVSFVGSMWFMPFLSTNYISYLPLKVGYDssksldcgwgellgGQGLYSFFMYMIDYIQSLYDYNFSVYLLTFIF 318
Cdd:MTH00095 461 YKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK--------------GFNFFSSFSFFFFSYMKSFKYNSLLILLFLIF 524
PRK12650 PRK12650
DUF4040 family protein;
1-150 1.45e-15

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 77.39  E-value: 1.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGC--LTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY-YDL--AFFHLLTHALFSALLFMCAGSMIHNlS 75
Cdd:PRK12650 273 WLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpFALtaAVVHTLAHALFKSSLFMLIGVVDHQ-A 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101025  76 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTA----SYSFRL 150
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-153 3.56e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 75.69  E-value: 3.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---AFFHLLTHALFSALLFMCAGSMIHNlSDS 77
Cdd:PRK08375 274 LAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLAlaaGLLHLLHHALMKGALFLAAGAIEVT-YGT 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVICLSWINFLIFFLyfISTGLTASYSFRLFYY 153
Cdd:PRK08375 353 RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIWYR 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-149 3.86e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 76.00  E-value: 3.86e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGyYDLA----FFHLLTHALFSALLFMCAGSMIHNlSDSQ 78
Cdd:PRK12648 276 GAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTR 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  79 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVICLSWINFLIFFLYFISTGLTASYSFR 149
Cdd:PRK12648 354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-152 8.56e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 74.96  E-value: 8.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHL---LTHALFSALLFMCAGSMIHNlSDS 77
Cdd:PRK12644 270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVI----CLSWINFLIFFLYFISTGLTASYSFRLFY 152
Cdd:PRK12644 349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 3-157 6.00e-14

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 72.27  E-value: 6.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMG------------YYDLAF----FHLLTHALFSALLFMC 66
Cdd:PRK12645 279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGSLFMI 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  67 AGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE---------VICLSWINFLIFFLYF 137
Cdd:PRK12645 359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFPVIAW 437

                        170       180
                 ....*....|....*....|
gi 674101025 138 ISTGLTASYSFRLFYYSMIG 157
Cdd:PRK12645 438 VASVFTFVYSIIFIFKTFFG 457
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-121 7.87e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 72.17  E-value: 7.87e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   4 IGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYD-------LAFFHLLTHALFSALLFMCAGSMIHNLSd 76
Cdd:PRK12649 284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAHEAA- 362

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 674101025  77 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12649 363 TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK12646 PRK12646
DUF4040 family protein;
4-121 1.05e-13

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 71.71  E-value: 1.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   4 IGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMG-------------YYDL----AFFHLLTHALFSALLFMC 66
Cdd:PRK12646 280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfaALFHLMNHAIFKCALFMG 359

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  67 AGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12646 360 VGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-121 7.11e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 69.18  E-value: 7.11e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---AFFHLLTHALFSALLFMCAGSMIHNlSDS 77
Cdd:PRK12647 262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-152 1.44e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 68.07  E-value: 1.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGSMIHNlSDS 77
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHA-AGT 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLyFISTGLTASYSFRLFY 152
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-115 3.62e-12

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 66.86  E-value: 3.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNlSDSQDI 80
Cdd:PRK07390 287 LIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDL 365

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 115
Cdd:PRK07390 366 TELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-150 1.52e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 61.71  E-value: 1.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGSMIHNLSDS 77
Cdd:PRK08377 276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITLGGT 355

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 674101025  78 QDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeVICLSWINFLIFFLYFISTGLTASYSFRL 150
Cdd:PRK08377 356 EIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-121 4.38e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 60.51  E-value: 4.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMM--------------SILSMGYYDLAFFHLLTHALFSALLFMC 66
Cdd:PRK08667 273 ILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgvyglDTLALLALGGALFHSLNHALFKSLLFLT 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  67 AGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK08667 353 AGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-152 1.30e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.85  E-value: 1.30e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGSMIHNLSDS 77
Cdd:PRK08668 275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTT 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 674101025  78 QdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVIcLSWINFLIFFLYFISTGLTASYSFRLFY 152
Cdd:PRK08668 355 K-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-157 2.89e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.80  E-value: 2.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---------------AFFHLLTHALFSALLFM 65
Cdd:PRK08376 290 IIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFL 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  66 CAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLswINFLIFFLYFISTGLTAS 145
Cdd:PRK08376 370 TAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLA 446

                        170
                 ....*....|..
gi 674101025 146 YSFRLFYYSMIG 157
Cdd:PRK08376 447 SFVKVFHTAFFG 458
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-120 5.61e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 57.21  E-value: 5.61e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  10 LMAGFGANF---EFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGSMIHNLSDSqDIRFM 83
Cdd:PRK12668 249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTalaINGAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTEL 327

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 674101025  84 GSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK12668 328 GGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-121 6.76e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 56.50  E-value: 6.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   3 LIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGyydlAFFHLlTHALFSALLFMCAGSmIHNLSDSQDIRF 82
Cdd:PRK07234 250 IFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-LPSRNFTELISQ 323

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101025  83 MGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK07234 324 MLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 49-126 7.81e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.82  E-value: 7.81e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025  49 AFFHLLTHALFSALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLS 126
Cdd:PRK06521 341 ALYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-186 1.32e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 55.98  E-value: 1.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMM---SILSMGYYDLAFFHLLTHALFSALLFMCAGSmIHNLSDS 77
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKE 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFIstgLTASYSFRLFYYSMIG 157
Cdd:PRK06589 362 DQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLV---VIASSILSALYLLKIL 438

                        170       180
                 ....*....|....*....|....*....
gi 674101025 158 DNNFYPSYffdDKSYFISFGMIGLLFVAV 186
Cdd:PRK06589 439 SSIYKPSL---SENSFITKSLPYLMQISV 464
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-113 6.40e-08

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 53.68  E-value: 6.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLA--------------FFHLLTHALFSALLFMC 66
Cdd:PRK08042 248 LLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLG 327

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 674101025  67 AGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 113
Cdd:PRK08042 328 AGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 7-229 6.71e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 53.73  E-value: 6.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   7 LTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDIRFMGSI 86
Cdd:MTH00063 229 LTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  87 VNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGDNNFYPSYF 166
Cdd:MTH00063 309 ILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVR 388

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 674101025 167 FDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYVIVLPLYLSFLTLFVVIIGFYLGYFISD 229
Cdd:MTH00063 389 FL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGVLFYD 442
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-157 7.09e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.55  E-value: 7.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLM-MSILSMGYYDL--AFFHLLTHALFSALLFMCAGsMIHNLSDS 77
Cdd:COG1008  278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVG-VLYDRTHT 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIG 157
Cdd:COG1008  357 RDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFG 434
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-120 9.39e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 53.05  E-value: 9.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYY------DLAFFHLLTHALFSALLFMCAGSMIHNL 74
Cdd:PRK06525 275 GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILgsrlalEGSIAYIFNHAFAKSLFFLVAGALSYSC 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 674101025  75 SdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK06525 355 G-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-163 2.52e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 51.87  E-value: 2.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---AFFHLLTHALFSALLFMCAGSMIHnLSDS 77
Cdd:PRK07691 278 ILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK-ITGT 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEViCLSWINFLIFFLYFISTGLTASYSFRLFYYSMIG 157
Cdd:PRK07691 357 TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEG-TFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435


                 ....*.
gi 674101025 158 DNNFYP 163
Cdd:PRK07691 436 EPKGYD 441
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 21-158 1.55e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.43  E-value: 1.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  21 DLSSIIALSTLSQLG-LMMSILSMGYYDL--AFFHLLTHALFSALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCF 97
Cdd:PRK05846 300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 674101025  98 NVSSLSLCGMPFLAGFYSKDLILevICLSWINFLIFFLYFISTGLTASYSFRLFYYSMIGD 158
Cdd:PRK05846 379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-69 6.63e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 47.39  E-value: 6.63e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGS 69
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-120 5.72e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 5.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDL---AFFHLLTHALFSALLFMCAGSMIHnLSDS 77
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 7.44e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.19  E-value: 7.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY---YDLAFFHLLTHALFSALLFMCAGsMIHNLSDS 77
Cdd:PRK12665 276 LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGS 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:PRK12665 355 SSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-133 3.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 3.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMG-YYDL--AFFHLLTHALFSALLFMCAGSMIHNLsDS 77
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYHF-GT 360

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLS--WINFLIF 133
Cdd:PRK12662 361 TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSnaWIGLVVL 418
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 29-69 1.76e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 40.02  E-value: 1.76e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 674101025  29 STLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGS 69
Cdd:PRK08601 297 STMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-120 1.90e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.91  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYyDLAFF----HLLTHALFSALLFMCAGSMIHNlSD 76
Cdd:PRK06458 284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YG 361

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 674101025  77 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 120
Cdd:PRK06458 362 TRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-151 2.37e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.35  E-value: 2.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAF---FHLLTHALFSALLFMCAGsMIHNLSDS 77
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EVICLS-WINFLIFFLYFISTGLTASYSFRLF 151
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-121 2.68e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 39.04  E-value: 2.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYyDLAFFHLLTHALFSALLFMcagsmIHNLSDSQDI 80
Cdd:MTH00112 154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSP-KLTLLTFYIYILMTTPMFL-----TLNTTSTKTL 227

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 674101025  81 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 121
Cdd:MTH00112 228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQ 268
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-197 4.47e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.56  E-value: 4.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGY-----YDLAFFHLLTHALFSALLFMCAGSMIhNLS 75
Cdd:PRK12664 204 LLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFMVADSVI-NRT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  76 DSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLYF--ISTGLTASYSFRLFYY 153
Cdd:PRK12664 283 RKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLFASVGLKFFWY 361

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 674101025 154 SMIGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 197
Cdd:PRK12664 362 AFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-116 5.83e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.17  E-value: 5.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLG-LMMSILSMGY--YDLAFFHLLTHALFSALLFMCAGSMIHNLSDS 77
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPlgVSAALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 674101025  78 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 116
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-197 9.20e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 37.50  E-value: 9.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025   1 LLLIGCLTMLMAGFGANFEFDLSSIIALSTLSQLGLMMSILSMGYYDLAFFHLLTHALFSALLFMCAGSMIHNLSDSQDI 80
Cdd:MTH00160 146 IIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNS 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 674101025  81 RFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEVICLSWINFLIFFLyFISTGLTASYSFRLFYYSMIGdNN 160
Cdd:MTH00160 226 NNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRISYSSLML-NY 297

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 674101025 161 FYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 197
Cdd:MTH00160 298 NKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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