|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-219 |
7.69e-149 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 418.92 E-value: 7.69e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-214 |
6.33e-61 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 195.39 E-value: 6.33e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLVHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFTI 75
Cdd:COG1290 171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 76 MLLLLTTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLNPFLHKSKQ 153
Cdd:COG1290 251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPV 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881083 154 RTMAFRPISQLLFWTLAANLFILTWVGSQPVehPFIIIGQLASLTYFTIILILFPITSSLE 214
Cdd:COG1290 329 RSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
48-195 |
5.24e-55 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 172.45 E-value: 5.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 48 NPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 127
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881083 128 KLGGVLALAASVLILFLNPFLHKSKQRTMaFRPISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLA 195
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
99-199 |
5.11e-49 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 155.33 E-value: 5.11e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRPISQLLFWTLAANLFILTW 178
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 694881083 179 VGSQPVEHPFIIIGQLASLTY 199
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
99-166 |
3.29e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 56.73 E-value: 3.29e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAF-RPISQLLF 166
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-219 |
7.69e-149 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 418.92 E-value: 7.69e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-219 |
1.13e-133 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 380.52 E-value: 1.13e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00100 320 LSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-219 |
4.39e-131 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 373.99 E-value: 4.39e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-219 |
3.39e-124 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 356.30 E-value: 3.39e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-209 |
1.56e-119 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 343.82 E-value: 1.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00191 157 LVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00191 237 LFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRP 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPI 209
Cdd:MTH00191 317 LTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-207 |
2.45e-114 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 330.59 E-value: 2.45e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00156 150 LVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00156 230 ILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYP 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILF 207
Cdd:MTH00156 310 INKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-218 |
3.60e-114 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 330.71 E-value: 3.60e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILfPITSSLENNIL 218
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-218 |
5.45e-111 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 322.81 E-value: 5.45e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00034 160 IVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAAL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00034 240 SSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRP 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNIL 218
Cdd:MTH00034 320 LSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-219 |
3.92e-104 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 305.45 E-value: 3.92e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILIlFPITSSLENNILK 219
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-219 |
2.98e-98 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 290.45 E-value: 2.98e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-219 |
2.26e-96 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 285.44 E-value: 2.26e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRP 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENNILK 219
Cdd:MTH00022 319 LGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-219 |
8.77e-86 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 258.70 E-value: 8.77e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRP 160
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTiILILFPITSSLENNILK 219
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-215 |
1.21e-70 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 220.19 E-value: 1.21e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLL 80
Cdd:MTH00033 157 IVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAF 158
Cdd:MTH00033 237 VIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTF 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694881083 159 RPISQLLFWTLAANLFILTWVGSQPV-EHPFIIIGQLASLTYFTIILILFPITSSLEN 215
Cdd:MTH00033 317 NPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-214 |
6.33e-61 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 195.39 E-value: 6.33e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLVHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFTI 75
Cdd:COG1290 171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFV 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 76 MLLLLTTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLNPFLHKSKQ 153
Cdd:COG1290 251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPV 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694881083 154 RTMAFRPISQLLFWTLAANLFILTWVGSQPVehPFIIIGQLASLTYFTIILILFPITSSLE 214
Cdd:COG1290 329 RSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-207 |
3.02e-57 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 184.76 E-value: 3.02e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFtIMLLLL 80
Cdd:MTH00086 149 IVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVF 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 81 TTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSkqrTMAFRP 160
Cdd:MTH00086 228 IIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNK 304
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 694881083 161 ISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILF 207
Cdd:MTH00086 305 LNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
48-195 |
5.24e-55 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 172.45 E-value: 5.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 48 NPLGISSNCDKIPFHPYFSLKDLLGFTIMLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 127
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881083 128 KLGGVLALAASVLILFLNPFLHKSKQRTMaFRPISQLLFWTLAANLFILTWVGSQPVEHPFIIIGQLA 195
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
99-199 |
5.11e-49 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 155.33 E-value: 5.11e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAFRPISQLLFWTLAANLFILTW 178
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 694881083 179 VGSQPVEHPFIIIGQLASLTY 199
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
7-207 |
8.31e-46 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 155.14 E-value: 8.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 7 GGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSNNPLGISSN-CDKIPFHPYFSLKDLLGFTIMLLLLTTLAL 85
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 86 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILFLNPFLHKSKqrtmAFRPISQLL 165
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVN 311
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 694881083 166 FWTLAANLFILTWVGSQPVEHPFIIIGQLASltyFTIILILF 207
Cdd:MTH00046 312 FWLIVSLFFSLSYLGGCHPEYPYLLISQLFS---VLMVLLLF 350
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-94 |
5.56e-17 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 74.97 E-value: 5.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHF-LLPFMITGLVLVHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFTIMLLL 79
Cdd:pfam13631 75 LVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVAL 154
|
90
....*....|....*
gi 694881083 80 LTTLALFSPNLLGDP 94
Cdd:pfam13631 155 LIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-47 |
6.93e-17 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 75.48 E-value: 6.93e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESGSN 47
Cdd:cd00284 154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-45 |
4.23e-13 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 65.10 E-value: 4.23e-13
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLVLVHLTFLHESG 45
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
99-166 |
6.45e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 61.17 E-value: 6.45e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHK-SKQRTMAFRPISQLLF 166
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
99-166 |
1.45e-10 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 57.50 E-value: 1.45e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAF-RPISQLLF 166
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF 134
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
99-166 |
3.29e-10 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 56.73 E-value: 3.29e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881083 99 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLNPFLHKSKQRTMAF-RPISQLLF 166
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-50 |
1.58e-04 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 41.24 E-value: 1.58e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLVHLTFLHESGSNNPL 50
Cdd:PRK03735 173 IKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-50 |
3.28e-04 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 40.47 E-value: 3.28e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 694881083 1 LVEWAWGGFSVDNPTLTRFFALH-FLLPFMITGLVLVHLTFLHESGSNNPL 50
Cdd:CHL00070 165 LVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|