NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|694881733|gb|AIS75668|]
View 

cytochrome b, partial (mitochondrion) [Trichoglossus haematodus deplanchii]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-224 4.30e-155

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 434.71  E-value: 4.30e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00119 156 YIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTL 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00119 236 MLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00119 316 MTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-224 4.30e-155

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 434.71  E-value: 4.30e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00119 156 YIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTL 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00119 236 MLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00119 316 MTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-219 2.18e-62

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 199.25  E-value: 2.18e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLALIHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDL 75
Cdd:COG1290  166 VIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  76 LGFAIMLLLLTTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLSPLL 153
Cdd:COG1290  246 FGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFL 323

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881733 154 HKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVehPFIIIGQLASLTYFTIILILFPITSSLE 219
Cdd:COG1290  324 DRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 53-200 1.02e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 171.67  E-value: 1.02e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  53 NPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 132
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881733 133 KLGGVLALAASVLILFLSPLLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLA 200
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
104-204 9.97e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 9.97e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTW 183
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 694881733  184 VGSQPVEHPFIIIGQLASLTY 204
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 104-171 1.75e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 1.75e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881733  104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 171
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-224 4.30e-155

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 434.71  E-value: 4.30e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00119 156 YIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTL 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00119 236 MLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00119 316 MTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-224 1.56e-136

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 387.86  E-value: 1.56e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00131 155 YVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAI 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00131 235 LLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRG 314

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00131 315 LTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-223 2.25e-135

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 384.76  E-value: 2.25e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00100 155 YIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00100 235 LILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRS 314

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKIL 223
Cdd:MTH00100 315 MMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-224 3.68e-130

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 371.71  E-value: 3.68e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00074 156 YMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00074 236 MLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00074 316 LMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-214 9.08e-124

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 354.99  E-value: 9.08e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00191 152 YIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFI 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00191 232 LLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRS 311

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPI 214
Cdd:MTH00191 312 NTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00145
cytochrome b; Provisional
 1-223 3.36e-118

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 341.11  E-value: 3.36e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00145 156 YVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVV 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00145 236 LLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILfPITSSLENKIL 223
Cdd:MTH00145 316 LSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00156
cytochrome b; Provisional
 1-212 3.99e-117

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 337.52  E-value: 3.99e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00156 145 YLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFII 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00156 225 MLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRG 304

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILF 212
Cdd:MTH00156 305 NQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-224 2.51e-116

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 336.68  E-value: 2.51e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00034 155 YIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLI 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00034 235 LFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQS 314

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00034 315 STFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-223 1.24e-106

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 312.00  E-value: 1.24e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00016 156 YIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIV 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00016 236 MLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRG 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTiILILFPITSSLENKIL 223
Cdd:MTH00016 316 LSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-224 9.09e-102

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 299.70  E-value: 9.09e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00053 156 YVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00053 236 LLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRG 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00053 316 LSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-224 1.65e-99

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 293.92  E-value: 1.65e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00022 154 YVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVV 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00022 234 LFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRG 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILFPITSSLENKILN 224
Cdd:MTH00022 314 LTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-224 3.57e-89

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 267.56  E-value: 3.57e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00224 156 YIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRT 160
Cdd:MTH00224 236 AILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRS 315

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTiILILFPITSSLENKILN 224
Cdd:MTH00224 316 LPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-220 1.49e-71

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 222.51  E-value: 1.49e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   2 IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFAIM 81
Cdd:MTH00033 153 VGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  82 LLLLTTLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQR 159
Cdd:MTH00033 233 FGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIR 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694881733 160 TMAFRPISQLLFWALAANLFILTWVGSQPV-EHPFIIIGQLASLTYFTIILILFPITSSLEN 220
Cdd:MTH00033 313 SLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-219 2.18e-62

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 199.25  E-value: 2.18e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLALIHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDL 75
Cdd:COG1290  166 VIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  76 LGFAIMLLLLTTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLSPLL 153
Cdd:COG1290  246 FGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFL 323

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694881733 154 HKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVehPFIIIGQLASLTYFTIILILFPITSSLE 219
Cdd:COG1290  324 DRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-212 1.23e-58

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 188.61  E-value: 1.23e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFaI 80
Cdd:MTH00086 144 IWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-I 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSkqrT 160
Cdd:MTH00086 223 FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---T 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 694881733 161 MAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASLTYFTIILILF 212
Cdd:MTH00086 300 SCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 53-200 1.02e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 171.67  E-value: 1.02e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  53 NPLGISSNCDKIPFHPYFSLKDLLGFAIMLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 132
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694881733 133 KLGGVLALAASVLILFLSPLLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLA 200
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
104-204 9.97e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 9.97e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTW 183
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 694881733  184 VGSQPVEHPFIIIGQLASLTY 204
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 2-212 1.53e-46

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 157.45  E-value: 1.53e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733   2 IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSNNPLGISSN-CDKIPFHPYFSLKDLLGFAI 80
Cdd:MTH00046 147 VGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMV 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733  81 MLLLLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILFLSPLLHKSKqrt 160
Cdd:MTH00046 227 VCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS--- 302

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 694881733 161 mAFRPISQLLFWALAANLFILTWVGSQPVEHPFIIIGQLASltyFTIILILF 212
Cdd:MTH00046 303 -VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFS---VLMVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-52 3.90e-19

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 81.65  E-value: 3.90e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESGSN 52
Cdd:cd00284  149 VIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-99 6.13e-19

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 80.36  E-value: 6.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694881733    1 YIGQTLVEWAWGGFSVDNPTLTRFFALHF-LLPFMIAGLALIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFA 79
Cdd:pfam13631  70 VVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFL 149

                          90       100
                  ....*....|....*....|
gi 694881733   80 IMLLLLTTLALFSPNLLGDP 99
Cdd:pfam13631 150 ITVALLIGLAQINPIWLGGP 169
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-50 3.54e-15

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 70.87  E-value: 3.54e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 694881733    1 YIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLALIHLTFLHESG 50
Cdd:pfam00033 140 VIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 104-171 4.60e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.24  E-value: 4.60e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881733 104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHK-SKQRTMAFRPISQLLF 171
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 104-171 5.44e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 5.44e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881733 104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 171
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 104-171 1.75e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 1.75e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694881733  104 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPISQLLF 171
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
petB CHL00070
cytochrome b6
 2-55 4.77e-06

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 45.87  E-value: 4.77e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 694881733   2 IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLALIHLTFLHESGSNNPL 55
Cdd:CHL00070 161 IGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-55 5.57e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 45.86  E-value: 5.57e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 694881733   1 YIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGLALIHLTFLHESGSNNPL 55
Cdd:PRK03735 168 VIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH