NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|699976673|gb|AIU45552|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Mirhipipteryx andensis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-213 7.11e-65

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 210.00  E-value: 7.11e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976673 161 MKFDLMEN--AFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:MTH00165 473 SLMSLSYNlkSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 7.11e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 210.00  E-value: 7.11e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976673 161 MKFDLMEN--AFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:MTH00165 473 SLMSLSYNlkSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 9.30e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.39  E-value: 9.30e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   79 YTFRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976673  159 LIMKFDL-MENAFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:pfam06455  81 ELSNLSNkQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWS 136
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-160 8.45e-24

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 98.30  E-value: 8.45e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVkDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILES-LSMGVVNKFIYLIFFIATGLTMMY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  80 TFRLtgYLMGF--KYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWL---------IFPSPLVIILPSWMKLLTLM 148
Cdd:COG1009  424 SFRL--FFLVFfgKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                        170
                 ....*....|..
gi 699976673 149 VTLVGGWLSYLI 160
Cdd:COG1009  502 LSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 7.11e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 210.00  E-value: 7.11e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976673 161 MKFDLMEN--AFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:MTH00165 473 SLMSLSYNlkSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWS 527
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-213 3.55e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 160.20  E-value: 3.55e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00209 309 GNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYS 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00209 389 MRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMV 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976673 161 MKFDLMenAFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:MTH00209 469 LKKNFF--LIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWV 519
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-212 2.46e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 149.92  E-value: 2.46e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00207 313 GSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00207 393 TRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLF 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976673 161 MKFDLMENAF-KGYKMKSFIG-SMWFMPMISTKWISFMPLKLGLKYLQLVDLGW 212
Cdd:MTH00207 473 TTPNITKTPLlINNPLSHFAScLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGW 526
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-212 2.73e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 149.61  E-value: 2.73e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00151 310 GSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYS 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSylI 160
Cdd:MTH00151 390 ARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLS--F 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 699976673 161 MKFDLMENAFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGW 212
Cdd:MTH00151 468 GFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGW 519
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-213 8.89e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 121.21  E-value: 8.89e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPS-PLVIILPSWMKLLTLMVTLVGGWLSYL 159
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLGLE 497

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976673 160 IMKFdlmENAFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKY-LQLVDLGWN 213
Cdd:MTH00211 498 LVNL---THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLsTHLMDLGWY 549
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-213 3.10e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 108.13  E-value: 3.10e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPlVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSF 528

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976673 161 MKFdLMENAFKgYKMKSFIGSMWFMPMISTKWISFMPLKLGLKY-LQLVDLGWN 213
Cdd:MTH00208 529 LLS-LSSNPIN-SNFFSFLSNQWFFVNISHSIIISFSFFTSLFGsTRTLDRGWS 580
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-188 3.97e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 104.99  E-value: 3.97e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00066 341 GSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYS 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGY-LMGFKySFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPS-PLVIILPSWMKLLTLMVTLVGGWLSY 158
Cdd:MTH00066 421 FRIIYFsSMKFP-RSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIAL 499

                        170       180       190
                 ....*....|....*....|....*....|
gi 699976673 159 LIMKfdLMENAFKGYKMKSFIGSMWFMPMI 188
Cdd:MTH00066 500 DLAK--ITSKTTPKTKMHSFSNLLAFFPTI 527
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-212 5.11e-26

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 104.86  E-value: 5.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00004 343 GSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYS 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGY-LMGFkYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPS-PLVIILPSWMKLLTLMVTLVGgwlSY 158
Cdd:MTH00004 423 LRMILLvQTGF-PRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILG---IL 498

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 699976673 159 LIMKFDLMENAF---KGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKY-LQLVDLGW 212
Cdd:MTH00004 499 LALELSNMTTTLtppKQNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQKIaTHLIDLSW 556
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 9.30e-26

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.39  E-value: 9.30e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   79 YTFRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976673  159 LIMKFDL-MENAFKGYKMKSFIGSMWFMPMISTKWISFMPLKLGLKYLQLVDLGWN 213
Cdd:pfam06455  81 ELSNLSNkQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWS 136
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-212 4.54e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 101.85  E-value: 4.54e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00108 344 GSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVII-LPSWMKLLTLMVTLVGgwlSYL 159
Cdd:MTH00108 424 TRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMtMPLYLKLTALAVTILG---FIL 500

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 699976673 160 IMKFDLMENAFKGYK---MKSFIGSMWFMPMISTKWISFMPLKLGLKY-LQLVDLGW 212
Cdd:MTH00108 501 ALELNLLTNNLKFKYpsnTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLaSMLLDLIW 557
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-160 8.45e-24

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 98.30  E-value: 8.45e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVkDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILES-LSMGVVNKFIYLIFFIATGLTMMY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  80 TFRLtgYLMGF--KYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWL---------IFPSPLVIILPSWMKLLTLM 148
Cdd:COG1009  424 SFRL--FFLVFfgKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                        170
                 ....*....|..
gi 699976673 149 VTLVGGWLSYLI 160
Cdd:COG1009  502 LSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-212 8.25e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 89.89  E-value: 8.25e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00137 349 GSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYS 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLTGY-LMGFKySFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPL-VIILPSWMKLLTLMVTLVGgwlsy 158
Cdd:MTH00137 429 LRVVFFvSMGHP-RFNPLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPLKTpVMTMPPLLKLAALIVTILG----- 502

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 699976673 159 LIMKFDLMENAFKGYKMKS------FIGSMWFMPMISTKWISFMPLKLGLKYL-QLVDLGW 212
Cdd:MTH00137 503 LLIALELASLTNKQFKPTPtlpphhFSNMLGFFPAIIHRLTPKLNLTLGQTIAtQMVDQTW 563
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-159 4.94e-20

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 87.52  E-value: 4.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILES-LSMGVVNKFIYLIffIATGLTMMY 79
Cdd:PRK06590 351 GSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAaFANGHINLFVAGL--VGAFLTAFY 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  80 TFRLtgYLMGF-----KYSFNSlsslHDSNSSMVVGIILLLVVAVVGG-----CSLSWLIFPSPLVII-----LPSWMKL 144
Cdd:PRK06590 429 SFRL--IFLVFhgkekEKIHHP----HESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVAL 502

                        170
                 ....*....|....*...
gi 699976673 145 LTLMVTLVG---GWLSYL 159
Cdd:PRK06590 503 LPLVVALAGialAWLLYL 520
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-160 5.06e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 75.81  E-value: 5.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLT--GYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSY 158
Cdd:MTH00210 425 IRLIylTFITNTNSKKEVFIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAF 504


                 ..
gi 699976673 159 LI 160
Cdd:MTH00210 505 VI 506
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-160 6.46e-16

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 75.50  E-value: 6.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00020 344 GSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  81 FRLT--GYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLI--FPSPLVIILPSWMKLLTLMVTLVGGWL 156
Cdd:MTH00020 424 IRLIylTFLSNTNLKKAVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSLGGIGL 503


                 ....
gi 699976673 157 SYLI 160
Cdd:MTH00020 504 VIIL 507
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-94 3.04e-10

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 58.88  E-value: 3.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDT--------QDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGvvNKFIYLIFFIA 72
Cdd:PRK07376 361 GSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLT 438

                         90       100
                 ....*....|....*....|..
gi 699976673  73 TGLTMMYTFRLtgYLMGFKYSF 94
Cdd:PRK07376 439 AGMTAFYMFRM--YFLTFEGEF 458
PRK12650 PRK12650
DUF4040 family protein;
10-134 6.96e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 55.05  E-value: 6.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYTFRLTGYLM- 88
Cdd:PRK12650 353 TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAVFTFAYSARLVl 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 699976673  89 -GFKYSFNSLSSLHDSNSSmvvgiiLLLVVAVVGGCSLSWLIFPSPL 134
Cdd:PRK12650 433 gAFVDGPRDMSHVKEAPVS------LWLPAALPGALSLPLGLVPGLL 473
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-54 7.18e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 54.96  E-value: 7.18e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976673   1 GSIIHSVK-DTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILE 54
Cdd:MTH00032 360 GSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-56 2.43e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 50.00  E-value: 2.43e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976673    1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESL 56
Cdd:pfam00361 220 GSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-95 8.25e-07

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 48.73  E-value: 8.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSV--------KDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILeslsmgvVNKFIY-----L 67
Cdd:CHL00025 361 GSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL-------NDSWLYspifaI 433

                         90       100
                 ....*....|....*....|....*...
gi 699976673  68 IFFIATGLTMMYTFRLtgYLMGFKYSFN 95
Cdd:CHL00025 434 IAWSTAGLTAFYMFRI--YLLTFEGHLR 459
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 1.37e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.04  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKdTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLsMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:PRK12667 368 GVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNAL-LESGFYLPALVLLIASAISLVGY 445

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 699976673  81 FRLTgYLMGFKYSFNSLSSLHDSNSSMVVgIILLLVVAVVG 121
Cdd:PRK12667 446 FRAW-YSLFFGKPKSGEEVEHKESPSMSV-VILVLALAVLI 484
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-83 1.86e-05

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 44.75  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKdTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLsMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:COG0651  345 GAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYF 422


                 ...
gi 699976673  81 FRL 83
Cdd:COG0651  423 VRI 425
PRK12646 PRK12646
DUF4040 family protein;
3-83 2.22e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 44.75  E-value: 2.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   3 IIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMG--------VVNKFIYLIFFIATG 74
Cdd:PRK12646 362 IIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTgqlsqfslISMIIIVFIGVIASI 441


                 ....*....
gi 699976673  75 LTMMYTFRL 83
Cdd:PRK12646 442 FTFTYALYM 450
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-122 2.41e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 2.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILE-SLSMGVVNKFIYLIFFIATG-----LTMMYTFRL 83
Cdd:PRK12649 363 TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYEtSVEMGALIGGPFTIIIPAVAvlggvFTFAYSIKL 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 699976673  84 T-GYLMGFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGG 122
Cdd:PRK12649 443 IdGIFLGERTHDHLPHHIHEAPYVMLIPAAFLAGLVILFG 482
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 10-135 3.51e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 43.92  E-value: 3.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILeslsMGVVNKFIYLIFFIATG--LTMMYTFRLTGYL 87
Cdd:COG1008  356 TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL----LGAFQVNPWLAILAALGliLTAAYLLWMYQRV 431

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 699976673  88 MgFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGcslswlIFPSPLV 135
Cdd:COG1008  432 F-FGPLKEELAELPDLNPRELAVLAPLAALILLLG------LYPQPLL 472
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-84 1.90e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 41.71  E-value: 1.90e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDL----ILESLSMGVVNKFIYLIFFIATGLTMMYTFRLT 84
Cdd:PRK12648 352 TRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLRFI 430
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-162 3.73e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 40.65  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKdTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILE-SLSMGVVnkFIYLIFFIATGLTMMY 79
Cdd:PRK12668 313 GAVLYRTG-TEKLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIISaAGEDHYV--WVWLLLLLASAGTFLH 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  80 TFRLTGYLMGFkySFNSLSSLHDSNSSMVVGIILLLVVAVVGGcslswlIFPSPLVIILP--------SWMKLLTLMVTL 151
Cdd:PRK12668 390 FGIKLPYFAFF--GGDSGLRVKDAPRNMLVAMGIAAFLCIAIG------VYPQALYALLPypvdyepyTASHVLEQLQLL 461

                        170
                 ....*....|.
gi 699976673 152 VGGWLSYLIMK 162
Cdd:PRK12668 462 LFTALAFVLLR 472
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-154 4.44e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 4.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVkDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLS-MGVVNKFIYLIFFIATGLTMMY 79
Cdd:PRK12647 332 GIIDHET-GTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLeAPLWSLILTVAAVLGNALMVAV 410

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 699976673  80 TFrltgyLMGFKYSFNSLSSL----HDSNSSMVVGIILLLVVAVVGGcslswlIFPSplviILPSWMklLTLMVTLVGG 154
Cdd:PRK12647 411 AF-----LVGIKPFLGKLVETpkhpHEAPVLMWLGPAVLAVLGLLFG------LFPF----FFHAAL--LSPAASAVLG 472
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 35-160 4.53e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 40.63  E-value: 4.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  35 LSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYTFRLTGYLMGFKySFNSLSSLHDSNSSMVVGIILL 114
Cdd:MTH00063 324 LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVK-SSLSSGVRFLFFNSGLMVFLWL 402

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 699976673 115 LVVavvggcslSWLIFPSPLVIILPSWMKLLTLMVTLVGGWLSYLI 160
Cdd:MTH00063 403 FIN--------YYVFLLLDEVVYLGVFISLVLLLVQLLGLLVGVLF 440
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 10-84 5.98e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.37  E-value: 5.98e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESL-SMGVVnkFIYLIFFIATGLTMMYTFRLT 84
Cdd:PRK08668 353 TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALiSKGMP--ITAFMAFFGSIGSFLYVFRPL 426
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-99 8.55e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 39.52  E-value: 8.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMGVVNKFIYLIFFIATGLTMMYT 80
Cdd:MTH00095 297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         90       100
                 ....*....|....*....|
gi 699976673  81 FRL-TGYLMGFKYSFNSLSS 99
Cdd:MTH00095 377 YRLwKSFFLSFSKVVNVYSS 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-82 2.48e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 38.37  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVkDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESL----SMGVVNKFIYLIFFIATGLT 76
Cdd:PRK12644 340 GIIDHST-GTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILT 418


                 ....*.
gi 699976673  77 MMYTFR 82
Cdd:PRK12644 419 VAYSLR 424
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-129 3.33e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.77  E-value: 3.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   1 GSIIHSVkDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLSMgvVNKFIYLIFFIATGLTMMYT 80
Cdd:PRK08376 372 GAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLASF 448

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 699976673  81 FRLTgYLMGFKYSFNSLSSLHDSNSSMVVGIIlLLVVAVVGGCSLSWLI 129
Cdd:PRK08376 449 VKVF-HTAFFGPPSEKVMNVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 7.68e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 36.78  E-value: 7.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673  10 TQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESlSMGVVNKFIYLIFFIATGLTMMYTFRLTGYLmg 89
Cdd:PRK08375 352 TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVG-AVEAGQWLVLAVLLASSLLALLYFLRIWYRA-- 428

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 699976673  90 fkysFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLV 135
Cdd:PRK08375 429 ----FFGPPPPGSEAPKQEAPLGMLAPSLALALLSLLLGIYAGPLL 470
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-137 8.92e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 36.72  E-value: 8.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976673   4 IHSVKDTQDIRFLGSMVQGMPFTCVAMNVANLSLCGVPFLSGFYSKDLILESLS---MGVVNKFIYLIFFIATGLTMMYT 80
Cdd:PRK06589 355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASeqnQPWLSIIVMLVVIASSILSALYL 434

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 699976673  81 FRLTGYLmgFKYSFNSLSSLHDSNSSMVVGIILLLVVAVVGGCSLSWLIFPSPLVII 137
Cdd:PRK06589 435 LKILSSI--YKPSLSENSFITKSLPYLMQISVITCCCALTLFYFIQILIREFLAYIT 489
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH