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Conserved domains on  [gi|699976689|gb|AIU45560|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Lentula callani]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.19e-70

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 223.48  E-value: 4.19e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.19e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 223.48  E-value: 4.19e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 7.85e-28

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 103.78  E-value: 7.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   79 YSFRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 699976689  159 LISKLSISYNLFSFNYsNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQG 134
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-160 5.02e-20

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 87.34  E-value: 5.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689    1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:TIGR01974 347 GSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYS 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMI-----------SLPFYLKLLTIFV 149
Cdd:TIGR01974 427 FRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAV 506

                         170
                  ....*....|.
gi 699976689  150 VCLGSYLGYLI 160
Cdd:TIGR01974 507 AILGILLAYLL 517
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-160 2.27e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.59  E-value: 2.27e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLkGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLS-YMNYFIFLLYFISTGLTASY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  80 SFRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWL---------IFPMPYMISLPFYLKLLTIFVV 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLS 503

                        170
                 ....*....|
gi 699976689 151 CLGSYLGYLI 160
Cdd:COG1009  504 LLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 4.19e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 223.48  E-value: 4.19e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-213 1.17e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 147.87  E-value: 1.17e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00209 309 GNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYS 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00209 389 MRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMV 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKlsisYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00209 469 LK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQG 517
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-213 1.77e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 144.99  E-value: 1.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00151 310 GSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYS 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVclgsYLGYLI 160
Cdd:MTH00151 390 ARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVI----LLGLFL 465

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00151 466 SFGFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMG 518
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-213 2.48e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 141.83  E-value: 2.48e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00207 313 GSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00207 393 TRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLF 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:MTH00207 473 TTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQG 525
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-213 2.01e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 125.83  E-value: 2.01e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMI-SLPFYLKLLTIFVVCLGSYLGYL 159
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLGLE 497

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976689 160 ISKLsisynLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIG-YISFKYFDFG 213
Cdd:MTH00211 498 LVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLG 547
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-180 1.00e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 118.03  E-value: 1.00e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00108 344 GSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPM--PYMiSLPFYLKLLTIFVVCLGSYLG- 157
Cdd:MTH00108 424 TRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTtiPQM-TMPLYLKLTALAVTILGFILAl 502

                        170       180
                 ....*....|....*....|....*.
gi 699976689 158 ---YLISKLSISYNLFSFNYSNLVSF 180
Cdd:MTH00108 503 elnLLTNNLKFKYPSNTFKFSNMLGY 528
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-202 4.29e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 113.53  E-value: 4.29e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPyMISLPFYLKLLTIFVVCLGSYLGYLI 160
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSF 528

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 699976689 161 SkLSISYNLFSFNYSNLVSFigsMWFMPFLTTKIISYLPLKI 202
Cdd:MTH00208 529 L-LSLSSNPINSNFFSFLSN---QWFFVNISHSIIISFSFFT 566
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-180 3.56e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 110.77  E-value: 3.56e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00066 341 GSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYS 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMI-SLPFYLKLLTIFVVCLGSYLGYL 159
Cdd:MTH00066 421 FRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIlTMPTFMKLAALLVTLLGLLIALD 500

                        170       180
                 ....*....|....*....|...
gi 699976689 160 ISKLS--ISYNLFSFNYSNLVSF 180
Cdd:MTH00066 501 LAKITskTTPKTKMHSFSNLLAF 523
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 7.85e-28

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 103.78  E-value: 7.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   79 YSFRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMISLPFYLKLLTIFVVCLGSYLGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 699976689  159 LISKLSISYNLFSFNYsNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDFG 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQG 134
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-204 7.28e-27

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 107.17  E-value: 7.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00004 343 GSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYS 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPM-PYMISLPFYLKLLTIFVVCLGSYLGYL 159
Cdd:MTH00004 423 LRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALE 502

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 699976689 160 ISKLsiSYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGY 204
Cdd:MTH00004 503 LSNM--TTTLTPPKQNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQ 545
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-213 4.79e-22

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 93.22  E-value: 4.79e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00020 344 GSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFS--VVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLI--FPMPYMISLPFYLKLLTIFVVCLGSYL 156
Cdd:MTH00020 424 IRLIYLTFLSNTNLKkaVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSLGGIGL 503

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689 157 GYLISKLSISY--NLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGY-ISFKYFDFG 213
Cdd:MTH00020 504 VIILYFYSSKTfrVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKG 563
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-88 7.29e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 92.97  E-value: 7.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00137 349 GSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYS 428


                 ....*....
gi 699976689  81 FRL-FYYSM 88
Cdd:MTH00137 429 LRVvFFVSM 437
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-213 3.06e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 90.84  E-value: 3.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNFS--VVSSYNDSGYYISFGMFLLLIVVVFGGS-----FLSWLIFPMpymisLPFYLKLLTIFVVCLG 153
Cdd:MTH00210 425 IRLIYLTFITNTNSKkeVFIGVHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPI-----VPNSIKMIPLLFSLLG 499

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 699976689 154 SYLGYLISKLSISYN------LFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGY-ISFKYFDFG 213
Cdd:MTH00210 500 ALLAFVIYNSMVFLIkisrrgVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRG 566
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-160 5.02e-20

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 87.34  E-value: 5.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689    1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:TIGR01974 347 GSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYS 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWLIFPMPYMI-----------SLPFYLKLLTIFV 149
Cdd:TIGR01974 427 FRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAV 506

                         170
                  ....*....|.
gi 699976689  150 VCLGSYLGYLI 160
Cdd:TIGR01974 507 AILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-160 2.16e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 85.60  E-value: 2.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILElTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:PRK06590 351 GSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYS 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFYYSMSGDNNfSVVSSYNDSGYYISFGMFLLLIVVVFGG-----SFLSWLIFPMPY-----MISLPFYLKLLTIFVV 150
Cdd:PRK06590 430 FRLIFLVFHGKEK-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELahgeaEHHLPVWVALLPLVVA 508

                        170
                 ....*....|
gi 699976689 151 CLGSYLGYLI 160
Cdd:PRK06590 509 LAGIALAWLL 518
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-160 2.27e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.59  E-value: 2.27e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLkGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLS-YMNYFIFLLYFISTGLTASY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  80 SFRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFGGSFLSWL---------IFPMPYMISLPFYLKLLTIFVV 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLS 503

                        170
                 ....*....|
gi 699976689 151 CLGSYLGYLI 160
Cdd:COG1009  504 LLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-91 3.04e-15

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 73.52  E-value: 3.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGI--------QDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSymNYFIFLLYFIS 72
Cdd:PRK07376 361 GSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLT 438

                         90
                 ....*....|....*....
gi 699976689  73 TGLTASYSFRLFYYSMSGD 91
Cdd:PRK07376 439 AGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-109 1.49e-09

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 56.82  E-value: 1.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGI--------QDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLsYMNYFIFLLYFiS 72
Cdd:CHL00025 361 GSVIHSMEPIvgyspdksQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWL-YSPIFAIIAWS-T 438

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 699976689  73 TGLTASYSFRLFYYSMSGD---NNFSVVSSYNDSGYYISF 109
Cdd:CHL00025 439 AGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-56 4.62e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 55.35  E-value: 4.62e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 699976689   1 GSMIHNLK-GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELT 56
Cdd:MTH00032 360 GSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELT 416
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-72 7.00e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 51.55  E-value: 7.00e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 699976689    1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFIS 72
Cdd:pfam00361 220 GSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-86 5.03e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 49.38  E-value: 5.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLkGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILElTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:COG0651  345 GAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ-AALEAGAWLLAAVLLLSSLLTLAYF 422


                 ....*.
gi 699976689  81 FRLFYY 86
Cdd:COG0651  423 VRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-128 4.52e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 46.50  E-value: 4.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILElTCLSYMNYFIFLLYFISTGLTASYSFRLFYYSM 88
Cdd:PRK12667 375 GTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN-ALLESGFYLPALVLLIASAISLVGYFRAWYSLF 453

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 699976689  89 SGDNNFSVVSSYNDSgYYISFGMFLLLIVVVFGGSFLSWL 128
Cdd:PRK12667 454 FGKPKSGEEVEHKES-PSMSVVILVLALAVLILGILALFL 492
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-212 1.11e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 45.29  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTASYS 80
Cdd:MTH00095 297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689  81 FRLFyysMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFggsFLSWLIFPMPYMISLPFYLKLLTIFVVCLgsyLGYLI 160
Cdd:MTH00095 377 YRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF---MIMLF 447

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 699976689 161 SKLSISYNLFSFNYSNLVSFIGSMWFMPFLTTKIISYLPLKIGYISFKYFDF 212
Cdd:MTH00095 448 SFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSS 499
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 2.18e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.55  E-value: 2.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHnLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTcLSYMNYFIFLLYFISTGLTASYS 80
Cdd:PRK07691 348 GIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSV 425

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 699976689  81 FRLFYYSMSGDNNFSVVSSYNDSGYYISFGMFLLLIVVVFG 121
Cdd:PRK07691 426 IKIFLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITILYG 466
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-129 2.39e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 41.24  E-value: 2.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   1 GSMIHNLkGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLsyMNYFIFLLYFISTGLTASYS 80
Cdd:PRK08376 372 GAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLASF 448

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 699976689  81 FRLFYYSMSGDNNFSVVSSyNDSGYYISFGMFLLLIVVVFGGSFlSWLI 129
Cdd:PRK08376 449 VKVFHTAFFGPPSEKVMNV-KEPPKPMLVPMLILAIAIIGMGLF-PWQI 495
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-86 5.39e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 40.25  E-value: 5.39e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYfISTGLTASYSFRLFYY 86
Cdd:PRK08375 351 GTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLL-ASSLLALLYFLRIWYR 427
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
16-53 1.26e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.11  E-value: 1.26e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 699976689  16 MGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLIL 53
Cdd:PRK12668 327 LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK12650 PRK12650
DUF4040 family protein;
9-83 1.36e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.26  E-value: 1.36e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLSYMNYFIFLLYFISTGLTA----SYSFRL 83
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 9-82 1.60e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 39.02  E-value: 1.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTC----LSYMNYFIFLLYFISTGLTASYSFR 82
Cdd:PRK12648 351 GTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFAETLdthlLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 9-54 2.17e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.36  E-value: 2.17e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILE 54
Cdd:PRK12647 339 GTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12646 PRK12646
DUF4040 family protein;
9-88 3.13e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.20  E-value: 3.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   9 GIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILE-LTCLSYMNYFIFLLYFISTGLTASYSFRLFYYS 87
Cdd:PRK12646 368 GTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDaLTQTGQLSQFSLISMIIIVFIGVIASIFTFTYA 447


                 .
gi 699976689  88 M 88
Cdd:PRK12646 448 L 448
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-96 4.04e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.49  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976689   4 IHNLKGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILELTCLS---YMNYFIFLLYFISTGLTASYS 80
Cdd:PRK06589 355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434

                         90
                 ....*....|....*...
gi 699976689  81 FRLFY--YSMSGDNNFSV 96
Cdd:PRK06589 435 LKILSsiYKPSLSENSFI 452
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 11-48 4.72e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 37.58  E-value: 4.72e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 699976689  11 QDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYS 48
Cdd:PRK07390 363 QDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 11-54 5.75e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 37.12  E-value: 5.75e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 699976689  11 QDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILE 54
Cdd:PRK12649 364 RDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-54 7.95e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 36.63  E-value: 7.95e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 699976689   1 GSMIHNLkGIQDIRFMGGIVNSMPLTSICFNVSSLSLCGIPFLTGFYSKDLILE 54
Cdd:PRK08667 354 GSVVHAT-GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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