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Conserved domains on  [gi|699976715|gb|AIU45573|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Cyphoderris monstrosa]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 7.10e-81

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 251.60  E-value: 7.10e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 SKFSLAYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 7.10e-81

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 251.60  E-value: 7.10e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 SKFSLAYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 1.41e-38

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 131.13  E-value: 1.41e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   79 YSLRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 699976715  159 ELSKFSLAYRLQSLNFYlLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFN-LHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQG 134
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-153 3.73e-23

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.58  E-value: 3.73e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715    1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:TIGR01974 347 GSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYS 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSM-------LSWVLFPTPEMIC----LPMIMKTLALSV 149
Cdd:TIGR01974 427 FRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFivplfefLKGVLPTSAEPALehhhVPALEIWSPTAV 506


                  ....
gi 699976715  150 SIIG 153
Cdd:TIGR01974 507 AILG 510
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-158 3.46e-22

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 93.68  E-value: 3.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMkNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILE-VVALSSLNMVSFFLYFFSTGLTVCY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  80 SLRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVL---------FPTPEMICLPMIMKTLALSVS 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaavLGGELHLAHGLLLNALPLLLS 503


                 ....*...
gi 699976715 151 IIGGWMGY 158
Cdd:COG1009  504 LLGIALGY 511
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-213 7.10e-81

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 251.60  E-value: 7.10e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00165 313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00165 393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 SKFSLAYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00165 473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQG 525
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-213 4.56e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 154.42  E-value: 4.56e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00209 309 GNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYS 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00209 389 MRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMV 468

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 SKfslaYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00209 469 LK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQG 517
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-213 7.79e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 154.15  E-value: 7.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00207 313 GSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYS 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00207 393 TRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLF 472

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 SKFSLAYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00207 473 TTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQG 525
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-213 6.37e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 151.53  E-value: 6.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00151 310 GSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYS 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGYel 160
Cdd:MTH00151 390 ARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF-- 467

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715 161 skFSLAYRLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:MTH00151 468 --GFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMG 518
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 79-213 1.41e-38

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 131.13  E-value: 1.41e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   79 YSLRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGY 158
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 699976715  159 ELSKFSLAYRLQSLNFYlLVSFMGSMWFMPFISTYGVNKVPMLMGDKVFKVFDQG 213
Cdd:pfam06455  81 ELSNLSNKQLKKSLNFN-LHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQG 134
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 2.81e-33

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 125.28  E-value: 2.81e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00004 343 GSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYS 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPT-PEMICLPMIMKTLALSVSIIGGWMGYE 159
Cdd:MTH00004 423 LRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALE 502


                 ...
gi 699976715 160 LSK 162
Cdd:MTH00004 503 LSN 505
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-213 6.41e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 124.29  E-value: 6.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPT-PEMICLPMIMKTLALSVSIIGGWMGYE 159
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLGLE 497

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 699976715 160 LSKFslayrLQSLNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKV-FKVFDQG 213
Cdd:MTH00211 498 LVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLsTHLMDLG 547
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-191 1.34e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 120.85  E-value: 1.34e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPeMICLPMIMKTLALSVSIIGGWMGYEL 160
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSF 528

                        170       180       190
                 ....*....|....*....|....*....|.
gi 699976715 161 SKFSLAYRLQSLNFyllvSFMGSMWFMPFIS 191
Cdd:MTH00208 529 LLSLSSNPINSNFF----SFLSNQWFFVNIS 555
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-164 2.33e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 114.23  E-value: 2.33e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00066 341 GSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYS 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMI-CLPMIMKTLALSVSIIGGWMGYE 159
Cdd:MTH00066 421 FRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIlTMPTFMKLAALLVTLLGLLIALD 500


                 ....*
gi 699976715 160 LSKFS 164
Cdd:MTH00066 501 LAKIT 505
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-161 2.05e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 108.79  E-value: 2.05e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00108 344 GSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPT--PEMIcLPMIMKTLALSVSIIGGWMGY 158
Cdd:MTH00108 424 TRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTtiPQMT-MPLYLKLTALAVTILGFILAL 502


                 ...
gi 699976715 159 ELS 161
Cdd:MTH00108 503 ELN 505
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-161 1.24e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 97.98  E-value: 1.24e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00137 349 GSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYS 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYY-SM-TSEFNcsSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFP--TPEMiCLPMIMKTLALSVSIIGGWM 156
Cdd:MTH00137 429 LRVVFFvSMgHPRFN--PLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPlkTPVM-TMPPLLKLAALIVTILGLLI 505


                 ....*
gi 699976715 157 GYELS 161
Cdd:MTH00137 506 ALELA 510
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-153 3.73e-23

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.58  E-value: 3.73e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715    1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:TIGR01974 347 GSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYS 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   81 LRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSM-------LSWVLFPTPEMIC----LPMIMKTLALSV 149
Cdd:TIGR01974 427 FRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFivplfefLKGVLPTSAEPALehhhVPALEIWSPTAV 506


                  ....
gi 699976715  150 SIIG 153
Cdd:TIGR01974 507 AILG 510
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-158 3.46e-22

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 93.68  E-value: 3.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMkNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILE-VVALSSLNMVSFFLYFFSTGLTVCY 79
Cdd:COG1009  345 GSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  80 SLRLAYYSMTSEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVL---------FPTPEMICLPMIMKTLALSVS 150
Cdd:COG1009  424 SFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaavLGGELHLAHGLLLNALPLLLS 503


                 ....*...
gi 699976715 151 IIGGWMGY 158
Cdd:COG1009  504 LLGIALGY 511
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-158 4.70e-22

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 93.30  E-value: 4.70e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEvVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:PRK06590 351 GSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYS 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCSSLHPlNDEGWVMLRGMLTLMVMAVLGG-----SMLSWVLFPT-----PEMICLPMIMKTLALSVS 150
Cdd:PRK06590 430 FRLIFLVFHGKEKEKIHHP-HESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTelahgEAEHHLPVWVALLPLVVA 508


                 ....*...
gi 699976715 151 IIGGWMGY 158
Cdd:PRK06590 509 LAGIALAW 516
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-213 2.47e-18

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 82.43  E-value: 2.47e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00020 344 GSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYS 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCS--SLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFP----TPEMIclPMIMKTLALSVSIIGG 154
Cdd:MTH00020 424 IRLIYLTFLSNTNLKkaVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIWSfqitLPPIV--PLSIKLLPVFLSLGGI 501

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 699976715 155 WMGYELSKFSLAYRLQSLNFYLLVS--FMGSMWFMPFISTYGVNKVPMLMGDKV-FKVFDQG 213
Cdd:MTH00020 502 GLVIILYFYSSKTFRVPFSFIGRNSytFLGSAWQFNYILNYFLIKKIWKGGHLIsYRTIDKG 563
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-213 1.03e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 71.96  E-value: 1.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 LRLAYYSMTSEFNCS--SLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVLFPTPEMICLPMIMKTLALSVSIIGGWMGY 158
Cdd:MTH00210 425 IRLIYLTFITNTNSKkeVFIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAF 504

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 699976715 159 ELSKFSLAYRLQS------LNFYLLVSFMGSMWFMPFISTYGVNKVPMLMGDKV-FKVFDQG 213
Cdd:MTH00210 505 VIYNSMVFLIKISrrgvsiRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLItYRIIDRG 566
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-91 5.94e-14

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 70.05  E-value: 5.94e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKN--------SQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSslNMVSFFLYFFS 72
Cdd:PRK07376 361 GSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLT 438

                         90
                 ....*....|....*....
gi 699976715  73 TGLTVCYSLRLayYSMTSE 91
Cdd:PRK07376 439 AGMTAFYMFRM--YFLTFE 455
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-72 1.31e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 59.25  E-value: 1.31e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 699976715    1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFS 72
Cdd:pfam00361 220 GSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-91 5.12e-09

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 55.28  E-value: 5.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNM--------KNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVsfFLYFFS 72
Cdd:CHL00025 361 GSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFA--IIAWST 438

                         90
                 ....*....|....*....
gi 699976715  73 TGLTVCYSLRLayYSMTSE 91
Cdd:CHL00025 439 AGLTAFYMFRI--YLLTFE 455
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-55 1.54e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 53.81  E-value: 1.54e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 699976715   1 GAIIHNMK-NSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEV 55
Cdd:MTH00032 360 GSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-83 4.14e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 49.38  E-value: 4.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHnMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEvVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:COG0651  345 GAIER-ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ-AALEAGAWLLAAVLLLSSLLTLAYF 422


                 ...
gi 699976715  81 LRL 83
Cdd:COG0651  423 VRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-129 9.31e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 9.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  10 SQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILeVVALSSLNMVSFFLYFFSTGLTVCYSLRLAYYSMT 89
Cdd:PRK08375 352 TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLV-VGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 699976715  90 SEFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVL 129
Cdd:PRK08375 431 GPPPPGSEAPKQEAPLGMLAPSLALALLSLLLGIYAGPLL 470
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-133 2.06e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.38  E-value: 2.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKnSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILevVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:COG1008  348 GVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYL 424

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 699976715  81 LRLAYYSMTSEFNcSSLHPLNDEGWVMLRGMLTLMVMAVLGGsmlswvLFPTP 133
Cdd:COG1008  425 LWMYQRVFFGPLK-EELAELPDLNPRELAVLAPLAALILLLG------LYPQP 470
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-122 1.79e-05

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 44.89  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHnMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:PRK12668 313 GAVLY-RTGTEKLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLLASAGTFLHFG 391

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 699976715  81 LRLAYYSMtseFNCSSLHPLNDEGWVMLRGMLTLMVMAVLGG 122
Cdd:PRK12668 392 IKLPYFAF---FGGDSGLRVKDAPRNMLVAMGIAAFLCIAIG 430
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-157 3.19e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 44.13  E-value: 3.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNmKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLyfFSTGLTVcys 80
Cdd:PRK07390 354 GSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGLWAVSPWLVGVLL--LVNALTA--- 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715  81 lrlayYSMTSEFNCSSL---HPLN----DEGWVMLRGMLTLMVMAVLGGSML-SWVLFPTPEMICLPMiMKTLALSvSII 152
Cdd:PRK07390 428 -----FNLTRVFRLVFLgkpQQKTrrspEVLWPMALPMVILAGFTLHLPLLLqQWGLLPSWEALNLWA-APLLVAS-GLL 500


                 ....*
gi 699976715 153 GGWMG 157
Cdd:PRK07390 501 GVLLG 505
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-92 1.42e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 41.83  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYS 80
Cdd:MTH00095 297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         90
                 ....*....|..
gi 699976715  81 LRLAYYSMTSEF 92
Cdd:MTH00095 377 YRLWKSFFLSFS 388
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-58 3.36e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.85  E-value: 3.36e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 699976715   1 GAIIHNMkNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVAL 58
Cdd:PRK08376 372 GAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL 428
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-129 6.26e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.98  E-value: 6.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKNSQdIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVcYS 80
Cdd:PRK08668 345 AAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFL-YV 422

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 699976715  81 LRLAYYSMTSEFNcSSLHPLNDEGWVMLRGMLTLMVMAVLGGSMLSWVL 129
Cdd:PRK08668 423 FRPLAGVFLGQLP-SDHKDVKEAPLPMLIPMAILVLLNVVFGVAPGLVL 470
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-85 1.00e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 39.57  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMKnSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTgLTVCYS 80
Cdd:PRK12667 368 GVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-ISLVGY 445


                 ....*
gi 699976715  81 LRLAY 85
Cdd:PRK12667 446 FRAWY 450
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-83 1.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.03  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   4 IHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSSLNMVSFFLYFFSTGLTVCYSLRL 83
Cdd:PRK06589 355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYL 434
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 12-85 2.68e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 38.25  E-value: 2.68e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 699976715  12 DIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLIL-EVVALSSLNMVSFFLYFFST---GLTVCYSLRLAY 85
Cdd:PRK12648 354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAFSVAYSLRFIH 431
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-60 2.90e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 37.95  E-value: 2.90e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 699976715   1 GAIIHNMkNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILEVVALSS 60
Cdd:PRK06521 360 GAVLHAT-GTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSSP 418
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-54 7.22e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 37.12  E-value: 7.22e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 699976715   3 IIHNMKNSQDIRFMGGLSSQMPLTSVCFNVSNFALCGMPFLAGFYSKDLILE 54
Cdd:PRK12649 356 IVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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