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Conserved domains on  [gi|712042469|gb|AIW64435|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Phaner pallescens]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 6.65e-68

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 199.40  E-value: 6.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 6.65e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 199.40  E-value: 6.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.39e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.39e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   18 VTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELMLLVALSL-IS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 712042469   97 ILALGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-113 1.81e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 1.81e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   5 LTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNL 84
Cdd:COG0838   10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFREL 87

                         90       100       110
                 ....*....|....*....|....*....|
gi 712042469  85 ELM-LLVALSLISILALGLAYEWFQKGLEW 113
Cdd:COG0838   88 GWFgLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 6.65e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 199.40  E-value: 6.65e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 8.24e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 143.52  E-value: 8.24e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLT-LAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWAS 79
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 712042469  80 QTNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 5-115 1.17e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 138.20  E-value: 1.17e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   5 LTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNL 84
Cdd:MTH00069   4 LMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTP 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 712042469  85 ELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00069  84 TNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 1.20e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 130.39  E-value: 1.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 9.86e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 113.15  E-value: 9.86e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 2.86e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 106.91  E-value: 2.86e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   3 LSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTN 82
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 712042469  83 NLELMLlvALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00203  84 SLSLLL--AFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.39e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.39e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   18 VTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELMLLVALSL-IS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 712042469   97 ILALGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 2.28e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 91.84  E-value: 2.28e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIY-VEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWAS 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 712042469  80 QTNNLELMLLVALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 3.72e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 88.68  E-value: 3.72e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   2 NLSLTLAIDTLLVLFLVTIAFWIPQLNIY-VEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 712042469  81 TNNLELMLLVALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-113 1.81e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 1.81e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   5 LTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNL 84
Cdd:COG0838   10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFREL 87

                         90       100       110
                 ....*....|....*....|....*....|
gi 712042469  85 ELM-LLVALSLISILALGLAYEWFQKGLEW 113
Cdd:COG0838   88 GWFgLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 3.36e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 86.20  E-value: 3.36e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWI--PQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWA 78
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  79 SQTNNLELMLLVALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-113 5.69e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 78.36  E-value: 5.69e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWI--PQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 712042469  79 SQTNNLELMLLVALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-114 2.09e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 76.67  E-value: 2.09e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469  32 EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNLELMLLVALSLIsILALGLAYEWFQKGL 111
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGGL 115


                 ...
gi 712042469 112 EWK 114
Cdd:MTH00055 116 EWE 118
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-113 3.70e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 76.06  E-value: 3.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   7 LAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIplPWASQTNNLEL 86
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF--PWAVSFREIGW 92

                         90       100
                 ....*....|....*....|....*...
gi 712042469  87 MLLV-ALSLISILALGLAYEWFQKGLEW 113
Cdd:PRK06602  93 LGFVeAMIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 13-113 1.15e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 72.66  E-value: 1.15e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469  13 LVLFLVTIAFWIPQLNIYV-----EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM 87
Cdd:MTH00030  18 IILLLVSISFTLGNSRIGLtkpdsEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLF 95

                         90       100
                 ....*....|....*....|....*..
gi 712042469  88 -LLVALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00030  96 sFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 9.08e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 69.71  E-value: 9.08e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469  32 EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LLVALSLISILALGLAYEWFQKG 110
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFgFWTMVGFLFILTLGLIYEWIKGG 109


                 ...
gi 712042469 111 LEW 113
Cdd:MTH00018 110 LEW 112
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 8-113 9.06e-13

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 59.69  E-value: 9.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   8 AIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLP--FSMKFFLVAITFLLFDLEIALLIPlpWASQTNNLE 85
Cdd:PRK07928  12 ALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALG 89

                         90       100
                 ....*....|....*....|....*....
gi 712042469  86 LMLLVALSL-ISILALGLAYEWFQKGLEW 113
Cdd:PRK07928  90 VFGLVEMALfMLTVFVAYAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 20-113 1.85e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.84  E-value: 1.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469  20 IAFWIPQL----NIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELMLLV-ALSL 94
Cdd:CHL00022  23 LAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVSAFIeALIF 100

                         90
                 ....*....|....*....
gi 712042469  95 ISILALGLAYEWFQKGLEW 113
Cdd:CHL00022 101 VLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-113 6.28e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 52.44  E-value: 6.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   7 LAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLEL 86
Cdd:PRK07756  16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKLGL 93

                         90       100
                 ....*....|....*....|....*...
gi 712042469  87 MLLVA-LSLISILALGLAYEWFQKGLEW 113
Cdd:PRK07756  94 FALIEmLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 8.84e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 8.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469  33 KYNPYECGFDPTGSARlPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELMLLV-ALSLISILALGLAYEWFQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFGLIeMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 712042469 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-113 1.87e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.65  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIDTLLVLFLVTIAFWIPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLpwasQ 80
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL----L 77

                         90       100       110
                 ....*....|....*....|....*....|...
gi 712042469  81 TNNLELMLLVALSLISILAlGLAYEWFQKGLEW 113
Cdd:MTH00092  78 VSDFSSLISFFMLMIFIFF-GFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 2.97e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.87  E-value: 2.97e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 712042469  34 YNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLP 76
Cdd:MTH00060  38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 1-100 3.03e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 34.97  E-value: 3.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 712042469   1 MNLSLTLAIdTLLVLFLVTIAFWIPQLNIYVEKYNP-----YECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPL 75
Cdd:PRK06073   4 MQAALAFGL-VIVLGLAAGVGTYKLLKLILPSKPTPlkvsrYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLI 82

                         90       100
                 ....*....|....*....|....*
gi 712042469  76 PWASQTNNLELMLLVALSLISILAL 100
Cdd:PRK06073  83 AFAPYYTFRDLLLLIVVALVLMYPV 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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