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Conserved domains on  [gi|732450250|gb|AIZ68482|]
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cytochrome b, partial (mitochondrion) [Hippidion saldiasi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-351 1.74e-149

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 425.98  E-value: 1.74e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00100  28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00100 108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00100 188 IITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00100 268 IKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPF 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIENT**K 351
Cdd:MTH00100 348 IIIGQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-351 1.74e-149

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 425.98  E-value: 1.74e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00100  28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00100 108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00100 188 IITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00100 268 IKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPF 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIENT**K 351
Cdd:MTH00100 348 IIIGQLASILYFLIILILMPIASLIENNLLK 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
103-348 3.26e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.59  E-value: 3.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 103 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-F*LPF******I*HLLFLHET***** 181
Cdd:COG1290  141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 182 **************----*******************LVLFSPDllGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSI 257
Cdd:COG1290  221 PGPERKKTEKVDGVpfhpYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 258 P--NKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVehPYVIIGQLASILYFSLI 335
Cdd:COG1290  299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFF 376

                        250
                 ....*....|...
gi 732450250 336 LIFMPLASTIENT 348
Cdd:COG1290  377 LIVLPILAFIEKT 389
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-176 3.54e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 137.88  E-value: 3.54e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:cd00284   20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 --T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*L 158
Cdd:cd00284  100 kkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLL 179

                        170
                 ....*....|....*...
gi 732450250 159 PF******I*HLLFLHET 176
Cdd:cd00284  180 PFIIAVIVILHLLFLHEQ 197
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
231-331 5.71e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.76  E-value: 5.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  231 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTW 310
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 732450250  311 IGGQPVEHPYVIIGQLASILY 331
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 215-300 1.87e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  215 LVLFSPDLLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHT-SKQRSMMFRPL 293
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128


                  ....*..
gi 732450250  294 SQCVFWF 300
Cdd:TIGR01156 129 ATTVFLF 135
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-351 1.74e-149

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 425.98  E-value: 1.74e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00100  28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00100 108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00100 188 IITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00100 268 IKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPF 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIENT**K 351
Cdd:MTH00100 348 IIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-347 3.52e-131

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 379.77  E-value: 3.52e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00131  28 SVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00131 108 LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00131 188 VIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00131 268 IKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPF 347

                        330       340
                 ....*....|....*....|....*..
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIEN 347
Cdd:MTH00131 348 IIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00119
cytochrome b; Provisional
 1-347 7.52e-131

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 378.86  E-value: 7.52e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00119  29 SAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00119 109 LYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00119 189 LIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00119 269 IKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPF 348

                        330       340
                 ....*....|....*....|....*..
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIEN 347
Cdd:MTH00119 349 IIIGQLASILYFTILLILFPLLGALEN 375
CYTB MTH00074
cytochrome b; Provisional
 1-351 2.57e-126

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 367.47  E-value: 2.57e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00074  29 SSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00074 109 MYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00074 189 LIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00074 269 IQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIENT**K 351
Cdd:MTH00074 349 IEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-341 1.70e-117

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 344.21  E-value: 1.70e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00191  25 SYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00191 105 LNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00191 185 LIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVH 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00191 265 IKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPF 344

                        330       340
                 ....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPL 341
Cdd:MTH00191 345 ILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-347 3.57e-113

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 333.98  E-value: 3.57e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00034  28 SIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00034 108 VNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00034 188 IIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00034 268 IQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPF 347

                        330       340
                 ....*....|....*....|....*..
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIEN 347
Cdd:MTH00034 348 ILLGQVASVLYFSLFLFFFPLISYLEN 374
CYTB MTH00156
cytochrome b; Provisional
 1-339 8.60e-105

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 311.72  E-value: 8.60e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00156  18 SYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSY 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00156  98 KLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPF 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00156 178 IILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVH 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00156 258 IQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPY 337

                        330
                 ....*....|....*....
gi 732450250 321 VIIGQLASILYFSLILIFM 339
Cdd:MTH00156 338 ILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-337 1.62e-103

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 309.14  E-value: 1.62e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00145  29 SIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00145 109 LMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00145 189 VILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00145 269 IQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPY 348

                        330
                 ....*....|....*..
gi 732450250 321 VIIGQLASILYFSLILI 337
Cdd:MTH00145 349 ETIGQVFTVLYFLFFLI 365
CYTB MTH00016
cytochrome b; Validated
 1-345 6.56e-100

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 300.06  E-value: 6.56e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00016  29 SIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00016 109 FLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00016 189 VIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00016 269 IKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPY 348

                        330       340
                 ....*....|....*....|....*
gi 732450250 321 VIIGQLASILYFSlILIFMPLASTI 345
Cdd:MTH00016 349 EFLGQIFTVFYFF-YFMINPLLMKL 372
CYTB MTH00053
cytochrome b; Provisional
 1-351 4.44e-96

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 290.45  E-value: 4.44e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00053  29 SYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00053 109 TKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00053 189 ILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00053 269 IKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPY 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIENT**K 351
Cdd:MTH00053 349 ILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-347 3.89e-94

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 285.44  E-value: 3.89e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00022  27 SYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGY 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00022 107 LKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPF 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00022 187 ILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVH 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00022 267 IQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPF 346

                        330       340
                 ....*....|....*....|....*..
gi 732450250 321 VIIGQLASILYFSLILIFMPLASTIEN 347
Cdd:MTH00022 347 ILIGQLLSFFYFFYFLVLIPLLGELEN 373
CYTB MTH00224
cytochrome b; Provisional
 1-351 7.91e-93

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 281.81  E-value: 7.91e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00224  29 SIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSF 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00224 109 NLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00224 189 AIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVEHPY 320
Cdd:MTH00224 269 IKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 732450250 321 VIIGQLASILYFSLiLIFMPLASTIENT**K 351
Cdd:MTH00224 349 EGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-347 2.29e-69

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 221.74  E-value: 2.29e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00033  25 SYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00033 105 SRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFS--PDLLGDPDNYTPANPLSTP 238
Cdd:MTH00033 185 VLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTP 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 239 PHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPV-E 317
Cdd:MTH00033 265 VHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgA 344

                        330       340       350
                 ....*....|....*....|....*....|
gi 732450250 318 HPYVIIGQLASILYFSLILIFMPLASTIEN 347
Cdd:MTH00033 345 DPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
CYTB MTH00086
cytochrome b; Provisional
 1-339 9.19e-59

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 193.62  E-value: 9.19e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:MTH00086  17 SYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSY 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*LPF 160
Cdd:MTH00086  97 RLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPW 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 161 ******I*HLLFLHET**************************************LVLFSPDLLGDPDNYTPANPLSTPPH 240
Cdd:MTH00086 177 GLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIEADPMMSPVH 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 241 IKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSkqRSMMFRPLSQCVFWFLVADLLtLTWIGGQPVEHPY 320
Cdd:MTH00086 256 IVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY--TSCLNKLNKFLVFSFIVVNVI-LSWLGQCLVEYPF 332

                        330
                 ....*....|....*....
gi 732450250 321 VIIGQLASILYFSLILIFM 339
Cdd:MTH00086 333 LFLSQIFSFIYFFLILLML 351
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
103-348 3.26e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.59  E-value: 3.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 103 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-F*LPF******I*HLLFLHET***** 181
Cdd:COG1290  141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 182 **************----*******************LVLFSPDllGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSI 257
Cdd:COG1290  221 PGPERKKTEKVDGVpfhpYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 258 P--NKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTWIGGQPVehPYVIIGQLASILYFSLI 335
Cdd:COG1290  299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFF 376

                        250
                 ....*....|...
gi 732450250 336 LIFMPLASTIENT 348
Cdd:COG1290  377 LIVLPILAFIEKT 389
CYTB MTH00046
cytochrome b; Validated
 67-338 1.39e-43

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 153.99  E-value: 1.39e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  67 LFIHVGRGLYYGSYT*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 146
Cdd:MTH00046  85 LFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGV 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 147 TLTRFFAFHF*LPF******I*HLLFLHET*************************-*************LVLFSPDLLGD 225
Cdd:MTH00046 165 TLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDVVYFHSYFTVKdLFLFMVVCSLLVFWLFVSPDLVLD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 226 PDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVlALILSILILAFIPTLHTSKQRSMmfrpLSQCVFWFLVADL 305
Cdd:MTH00046 245 IEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLF 319

                        250       260       270
                 ....*....|....*....|....*....|...
gi 732450250 306 LTLTWIGGQPVEHPYVIIGQLASILYFSLILIF 338
Cdd:MTH00046 320 FSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-176 3.54e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 137.88  E-value: 3.54e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYGSY 80
Cdd:cd00284   20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  81 --T*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*L 158
Cdd:cd00284  100 kkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLL 179

                        170
                 ....*....|....*...
gi 732450250 159 PF******I*HLLFLHET 176
Cdd:cd00284  180 PFIIAVIVILHLLFLHEQ 197
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
231-331 5.71e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.76  E-value: 5.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  231 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSMMFRPLSQCVFWFLVADLLTLTW 310
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 732450250  311 IGGQPVEHPYVIIGQLASILY 331
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-176 9.47e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 130.97  E-value: 9.47e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250    1 SSWWNFGSLLGICLILQILTGL********************************************LFIHVGRGLYYG-- 78
Cdd:pfam00033  11 SIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgf 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250   79 SYT*********************GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*L 158
Cdd:pfam00033  91 SYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLL 170

                         170
                  ....*....|....*...
gi 732450250  159 PF******I*HLLFLHET 176
Cdd:pfam00033 171 PFILAILMLLHLLFLHET 188
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 215-327 1.71e-36

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 128.92  E-value: 1.71e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 215 LVLFSPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHTSKQRSmMFRPLS 294
Cdd:cd00290   36 LVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLR 114

                         90       100       110
                 ....*....|....*....|....*....|...
gi 732450250 295 QCVFWFLVADLLTLTWIGGQPVEHPYVIIGQLA 327
Cdd:cd00290  115 PTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
103-176 1.16e-15

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 73.82  E-value: 1.16e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 732450250  103 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF*-LPF******I*HLLFLHET 176
Cdd:pfam13631  45 GYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKH 119
petB CHL00070
cytochrome b6
 103-171 6.07e-12

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 64.36  E-value: 6.07e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 103 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-F*LPF******I*HLL 171
Cdd:CHL00070 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFL 204
PRK03735 PRK03735
cytochrome b6; Provisional
 103-171 4.84e-11

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 61.65  E-value: 4.84e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 103 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-F*LPF******I*HLL 171
Cdd:PRK03735 143 GYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 215-312 1.16e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 53.64  E-value: 1.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 215 LVLFSPDLLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHT-SKQRSMMFRPL 293
Cdd:COG5679   55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPV 129

                         90
                 ....*....|....*....
gi 732450250 294 SQCVfwFLVADLLTLtWIG 312
Cdd:COG5679  130 ATAV--FLFGTLVTL-WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 215-300 8.70e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 8.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250 215 LVLFSPDLLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTL-HTSKQRSMMFRPL 293
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128


                 ....*..
gi 732450250 294 SQCVFWF 300
Cdd:CHL00058 129 ATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 215-300 1.87e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 732450250  215 LVLFSPDLLGDPdnytpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFIPTLHT-SKQRSMMFRPL 293
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPV 128


                  ....*..
gi 732450250  294 SQCVFWF 300
Cdd:TIGR01156 129 ATTVFLF 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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