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Conserved domains on  [gi|749393171|gb|AJF17599|]
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zbed4, partial [Xenopus laevis]

Protein Classification

zf-BED domain-containing protein( domain architecture ID 10502499)

zf-BED domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
1-34 1.97e-08

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 47.75  E-value: 1.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 749393171    1 TKVVCMHCGRTISRGKkptnlGTSCLLRHLQRFH 34
Cdd:pfam02892  15 TKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
1-34 1.97e-08

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 47.75  E-value: 1.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 749393171    1 TKVVCMHCGRTISRGKkptnlGTSCLLRHLQRFH 34
Cdd:pfam02892  15 TKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 1-34 6.10e-08

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 46.65  E-value: 6.10e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 749393171     1 TKVVCMHCGRTISRGKkptNLGTSCLLRHLQRFH 34
Cdd:smart00614  17 QRAKCKYCGKKLSRSS---KGGTSNLRRHLRRKH 47
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
1-34 1.97e-08

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 47.75  E-value: 1.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 749393171    1 TKVVCMHCGRTISRGKkptnlGTSCLLRHLQRFH 34
Cdd:pfam02892  15 TKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 1-34 6.10e-08

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 46.65  E-value: 6.10e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 749393171     1 TKVVCMHCGRTISRGKkptNLGTSCLLRHLQRFH 34
Cdd:smart00614  17 QRAKCKYCGKKLSRSS---KGGTSNLRRHLRRKH 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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