|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
3.26e-94 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 275.89 E-value: 3.26e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
5.93e-44 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 148.01 E-value: 5.93e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 751143292 76 FTFKDLITIILMtsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-139 |
1.29e-28 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 101.95 E-value: 1.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 59 NPLGINSNIEKIPFHPYFTFKDLITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 751143292 139 K 139
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
3.83e-26 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 96.16 E-value: 3.83e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 751143292 80 DLITIILMTSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
82-139 |
8.12e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 42.86 E-value: 8.12e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143292 82 ITIILMTSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:TIGR01156 42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
3.26e-94 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 275.89 E-value: 3.26e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-139 |
1.36e-81 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 244.05 E-value: 1.36e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00191 146 LLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKD 225
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00191 226 ILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-139 |
1.95e-81 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 244.04 E-value: 1.95e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00145 150 LLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00145 230 LVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-139 |
1.18e-80 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 242.11 E-value: 1.18e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00119 150 LLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00119 230 LLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-139 |
3.84e-79 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 238.40 E-value: 3.84e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00131 149 LLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00131 229 LLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-139 |
4.02e-79 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 238.04 E-value: 4.02e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00074 150 LLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00074 230 LLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-139 |
2.60e-77 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 233.38 E-value: 2.60e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00100 149 LLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00100 229 ILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-139 |
2.93e-76 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 230.72 E-value: 2.93e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00016 150 LLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00016 230 IVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-139 |
3.36e-72 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 220.35 E-value: 3.36e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00034 149 LVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00034 229 LVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-139 |
4.72e-64 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 199.54 E-value: 4.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00022 148 LLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKD 227
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00022 228 WYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-139 |
5.57e-63 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 196.85 E-value: 5.57e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00053 150 LLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00053 230 LYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-139 |
2.74e-62 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 195.14 E-value: 2.74e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00224 150 LFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00224 230 ALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-139 |
4.31e-50 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 163.19 E-value: 4.31e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00086 138 LLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD 217
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 81 LITIILMTsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00086 218 AYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-139 |
3.82e-44 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 148.55 E-value: 3.82e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFKD 80
Cdd:MTH00033 146 LVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 751143292 81 LITIILMTSLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00033 226 ILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
5.93e-44 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 148.01 E-value: 5.93e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 751143292 76 FTFKDLITIILMtsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKDGFGFFVF--LGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-139 |
9.98e-35 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 123.17 E-value: 9.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSNNPLGINSNI-EKIPFHPYFTFK 79
Cdd:MTH00046 140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVK 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 80 DLITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:MTH00046 220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSK 279
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-139 |
1.29e-28 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 101.95 E-value: 1.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 59 NPLGINSNIEKIPFHPYFTFKDLITIILMTSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQP*WYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 751143292 139 K 139
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
3.83e-26 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 96.16 E-value: 3.83e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFLIAAMAAIHLFLLHQTGSNNPLGINSNIEKIPFHPYFTFK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 751143292 80 DLITIILMTSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-58 |
3.05e-19 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 79.33 E-value: 3.05e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTGSN 58
Cdd:cd00284 143 LFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-56 |
1.13e-17 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 75.11 E-value: 1.13e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 751143292 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIAAMAAIHLFLLHQTG 56
Cdd:pfam00033 134 LLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
110-139 |
6.72e-14 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 62.88 E-value: 6.72e-14
10 20 30
....*....|....*....|....*....|
gi 751143292 110 PANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSK 30
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
83-139 |
2.70e-07 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 47.10 E-value: 2.70e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143292 83 TIILMT-SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:COG5679 43 VVILGTiALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNK 95
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-61 |
4.55e-07 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 47.01 E-value: 4.55e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143292 3 SAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIAAMAAIHLFLLHQTGSNNPL 61
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-61 |
5.91e-07 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 46.64 E-value: 5.91e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143292 4 AIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIAAMAAIHLFLLHQTGSNNPL 61
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
82-139 |
4.54e-06 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 43.45 E-value: 4.54e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143292 82 ITIILMTSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:CHL00058 42 VVILGTIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNK 94
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
82-139 |
8.12e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 42.86 E-value: 8.12e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143292 82 ITIILMTSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQP*WYFLFAYAILRSIPNK 139
Cdd:TIGR01156 42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
|