NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|768525188|gb|AJU38248|]
View 

Ymr31p [Saccharomyces cerevisiae YJM981]

Protein Classification

ribosomal protein S36 family protein( domain architecture ID 10566981)

ribosomal protein S36 family protein similar to Saccharomyces cerevisiae 37S ribosomal protein YMR-31, a component of the mitochondrial small ribosomal subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
S36_mt pfam10937
Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal ...
 16-122 2.87e-36

Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36.


:

Pssm-ID: 402493  Cd Length: 116  Bit Score: 119.79  E-value: 2.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768525188   16 MIKFVGTRH-PLVKH-ATEVVVHPCATNGMLPGSKECIPVSKFMENYKPFRVVPIKHSANAGLSSS-------------- 79
Cdd:pfam10937   1 MIKFLGKRHvPSVDHtPHKATPHPCSPTGLLPGSSSFASYREFAQQHGPLQVVPYKSSQKSSSTPSggigggsgaslgsv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768525188   80 --KTSVFVNRPLqkdelasifELPARFRYKPINEHELESINSGGA 122
Cdd:pfam10937  81 epPKGEFFDRPL---------ELPARFRRKPITEAEIEAIESGGA 116
 
Name Accession Description Interval E-value
S36_mt pfam10937
Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal ...
 16-122 2.87e-36

Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36.


Pssm-ID: 402493  Cd Length: 116  Bit Score: 119.79  E-value: 2.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768525188   16 MIKFVGTRH-PLVKH-ATEVVVHPCATNGMLPGSKECIPVSKFMENYKPFRVVPIKHSANAGLSSS-------------- 79
Cdd:pfam10937   1 MIKFLGKRHvPSVDHtPHKATPHPCSPTGLLPGSSSFASYREFAQQHGPLQVVPYKSSQKSSSTPSggigggsgaslgsv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768525188   80 --KTSVFVNRPLqkdelasifELPARFRYKPINEHELESINSGGA 122
Cdd:pfam10937  81 epPKGEFFDRPL---------ELPARFRRKPITEAEIEAIESGGA 116
 
Name Accession Description Interval E-value
S36_mt pfam10937
Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal ...
 16-122 2.87e-36

Ribosomal protein S36, mitochondrial; This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36.


Pssm-ID: 402493  Cd Length: 116  Bit Score: 119.79  E-value: 2.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768525188   16 MIKFVGTRH-PLVKH-ATEVVVHPCATNGMLPGSKECIPVSKFMENYKPFRVVPIKHSANAGLSSS-------------- 79
Cdd:pfam10937   1 MIKFLGKRHvPSVDHtPHKATPHPCSPTGLLPGSSSFASYREFAQQHGPLQVVPYKSSQKSSSTPSggigggsgaslgsv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768525188   80 --KTSVFVNRPLqkdelasifELPARFRYKPINEHELESINSGGA 122
Cdd:pfam10937  81 epPKGEFFDRPL---------ELPARFRRKPITEAEIEAIESGGA 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH