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Conserved domains on  [gi|768811329|gb|AJV27933|]
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Ecm34p [Saccharomyces cerevisiae YJM1190]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUP super family cl02924
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 125-184 6.41e-21

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


The actual alignment was detected with superfamily member pfam00674:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 86.58  E-value: 6.41e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  125 KQITQFAKEIIKSAPSTDMESWDRVAADFNSYMYENKLWNTEYFFFDGSSCHVAFRRTLL 184
Cdd:pfam00674  30 HFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLIL 89
DUP super family cl02924
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 285-377 1.85e-19

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


The actual alignment was detected with superfamily member pfam00674:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 82.73  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  285 PALFVVLVCSQEWFSFEMNRSC-SMKVEH-RMQFLSTIISEHQKSDVNCWDQIAKKMNVYLFEQKVSGSDVFFLDGADCE 362
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGsSVSDEHfKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 768811329  363 RFFERNFLRYLPSRK 377
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 125-184 6.41e-21

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 86.58  E-value: 6.41e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  125 KQITQFAKEIIKSAPSTDMESWDRVAADFNSYMYENKLWNTEYFFFDGSSCHVAFRRTLL 184
Cdd:pfam00674  30 HFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLIL 89
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 285-377 1.85e-19

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 82.73  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  285 PALFVVLVCSQEWFSFEMNRSC-SMKVEH-RMQFLSTIISEHQKSDVNCWDQIAKKMNVYLFEQKVSGSDVFFLDGADCE 362
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGsSVSDEHfKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 768811329  363 RFFERNFLRYLPSRK 377
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 125-184 6.41e-21

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 86.58  E-value: 6.41e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  125 KQITQFAKEIIKSAPSTDMESWDRVAADFNSYMYENKLWNTEYFFFDGSSCHVAFRRTLL 184
Cdd:pfam00674  30 HFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLIL 89
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 285-377 1.85e-19

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 82.73  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768811329  285 PALFVVLVCSQEWFSFEMNRSC-SMKVEH-RMQFLSTIISEHQKSDVNCWDQIAKKMNVYLFEQKVSGSDVFFLDGADCE 362
Cdd:pfam00674   2 LVLVLIILLLICIVFPNIRMFGsSVSDEHfKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQ 81

                          90
                  ....*....|....*
gi 768811329  363 RFFERNFLRYLPSRK 377
Cdd:pfam00674  82 EFFRRLILGPLSSKK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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