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Conserved domains on  [gi|770593225|gb|AJW76353|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Cylindraustralia sp. HS-2014]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-176 4.41e-31

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 109.90  E-value: 4.41e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225   3 MITISTTMVLTSMFFMSINHPLSMGMILLIQTTLTSIMSGVYLQSFWYPYILFLIFIGGLLVLFIYVTSISSNELFSISA 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225  83 MNWLMFIVILFTSLLTFWFIHDMFFNQVLFNNNEsnqikfdnstqdltTNMTLSWLYNKPSFIMTMLLIIYLFLALEAVS 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFE--------------NSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 770593225 163 NIINILQGPLRQMS 176
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-176 4.41e-31

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 109.90  E-value: 4.41e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225   3 MITISTTMVLTSMFFMSINHPLSMGMILLIQTTLTSIMSGVYLQSFWYPYILFLIFIGGLLVLFIYVTSISSNELFSISA 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225  83 MNWLMFIVILFTSLLTFWFIHDMFFNQVLFNNNEsnqikfdnstqdltTNMTLSWLYNKPSFIMTMLLIIYLFLALEAVS 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFE--------------NSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 770593225 163 NIINILQGPLRQMS 176
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-176 4.41e-31

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 109.90  E-value: 4.41e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225   3 MITISTTMVLTSMFFMSINHPLSMGMILLIQTTLTSIMSGVYLQSFWYPYILFLIFIGGLLVLFIYVTSISSNELFSISA 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225  83 MNWLMFIVILFTSLLTFWFIHDMFFNQVLFNNNEsnqikfdnstqdltTNMTLSWLYNKPSFIMTMLLIIYLFLALEAVS 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFE--------------NSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 770593225 163 NIINILQGPLRQMS 176
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-174 1.86e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 51.16  E-value: 1.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225   1 MIMITISTTMVLTSMFFMSINHPLSMGMILLIQTTLTSIMSGVYLQSfWYPYILFLIFIGGLLVLFIYVTSISSNELFSi 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLF- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225  81 saMNWLMFIVILFTSLLTFWFIHDMFFNQVLFNNNESNQIKFdnstqdlttnmtLSWLYNKPSFIMTMLLIIYLFLALEA 160
Cdd:MTH00212  79 --FKKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELN------------VSKILSNNNIPILLFLGLILLIALLM 144

                        170
                 ....*....|....
gi 770593225 161 VSNIINILQGPLRQ 174
Cdd:MTH00212 145 VVKICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-101 4.90e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 49.89  E-value: 4.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593225   1 MIMITISTTMVLTSMFFMSInHPLSMGMILLIQTTLTSIMSGVYLqSFWYPYILFLIFIGGLLVLFIYVTSISSNELFSI 80
Cdd:MTH00152   2 SLMILLSVCFSLFLLLPLSK-QPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                         90       100
                 ....*....|....*....|.
gi 770593225  81 SAMNWLMFIVILFTSLLTFWF 101
Cdd:MTH00152  80 NFKFVFFSLTLFGFLGLFFFF 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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