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Conserved domains on  [gi|770593229|gb|AJW76356|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Pseudothericles compressifrons]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-333 1.39e-91

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 276.32  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSGKNFFwe 80
Cdd:MTH00160   8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF-- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 etNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYsIIIFSILSVWVGALGGL 160
Cdd:MTH00160  86 --NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNF-IIIIIILSAIIGAIGGL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 161 NQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLS 240
Cdd:MTH00160 163 NQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 241 LGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMtKSNLLTYSLGIMTMI 320
Cdd:MTH00160 243 LGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK-KKNKFSLILNFLSFI 321

                        330
                 ....*....|...
gi 770593229 321 SSLGLMLASTVLI 333
Cdd:MTH00160 322 SLFGLILSSLLFL 334
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-333 1.39e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 276.32  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSGKNFFwe 80
Cdd:MTH00160   8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF-- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 etNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYsIIIFSILSVWVGALGGL 160
Cdd:MTH00160  86 --NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNF-IIIIIILSAIIGAIGGL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 161 NQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLS 240
Cdd:MTH00160 163 NQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 241 LGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMtKSNLLTYSLGIMTMI 320
Cdd:MTH00160 243 LGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK-KKNKFSLILNFLSFI 321

                        330
                 ....*....|...
gi 770593229 321 SSLGLMLASTVLI 333
Cdd:MTH00160 322 SLFGLILSSLLFL 334
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-292 4.60e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 116.37  E-value: 4.60e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMmGSMLSVSSNSWLGVWMGLEINMLSFIPLMS-NSKNTMMNETSIKYFIIQALASTMLLFSIILI-------- 71
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsln 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  72 --QSGKNFFWEETNN----ISMLLIISSLMMKLGAAPFHFWFPEI-----------MSASSWMNCFILMTwqKIAPMTVM 134
Cdd:COG1007  185 laGIAAALAAGGANSplllLGLVLVLAGLAFKLSAVPFHMWTPDVyegaptpvtafLATAPKIAAFAALL--RLLVEAFP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 135 SYCLKMNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMA------SMGVNEIMwqLYFIVYSMLSL----V 204
Cdd:COG1007  263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaagtPLGVSAAL--FYLLAYLFMNLgafaV 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 205 MTMMfnENKLFFMNQLFNYNNENIINK---FMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLY 281
Cdd:COG1007  341 ILLL--SRKGGEAEEIEDLAGLARRSPllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418

                        330
                 ....*....|.
gi 770593229 282 YYLRISFVAFM 292
Cdd:COG1007  419 YYLRVVKAMYF 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-276 2.34e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   17 SNSWLGVWMGLEINMLSFIPLM-SNSKNTMMNETSIKYFIIQALASTMLLFSIILI--QSGKNFFWEE-----------T 82
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   83 NNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMN-CFILMTWQKIAPMTVMSYCL-------KMNYSIIIFSILSVWV 154
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSLlylpsspFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  155 GALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIM----WQLYFIVYSMLS-----LVMTMMFNENKLFFMNQLFNYNN 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSaglflCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 770593229  226 ENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILT 276
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-323 3.08e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.11  E-value: 3.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   10 GSMLSVSSNSWLGVWMGLEINMLSFIPLMSNS-KNTMMNETSIKYFIIQALASTMLLF--SIILIQSG-------KNFFW 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFgiSLIYGFTGslnfedlLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   80 EETNNISML-----LIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAP----MTVMSYCLKMNYSII----- 145
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavfLRLFLYILFGFSEAWqifla 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  146 IFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTM----------MFNENKLF 215
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLgafgvlsllrSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  216 FMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMST 295
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433

                         330       340
                  ....*....|....*....|....*...
gi 770593229  296 NEIKWNFNMTKSNLLTYSLGIMTMISSL 323
Cdd:TIGR01770 434 ERRIPSNPQSKAQSLLLSISALFILFLG 461
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-333 1.39e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 276.32  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSGKNFFwe 80
Cdd:MTH00160   8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF-- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 etNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYsIIIFSILSVWVGALGGL 160
Cdd:MTH00160  86 --NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNF-IIIIIILSAIIGAIGGL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 161 NQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLS 240
Cdd:MTH00160 163 NQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 241 LGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMtKSNLLTYSLGIMTMI 320
Cdd:MTH00160 243 LGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK-KKNKFSLILNFLSFI 321

                        330
                 ....*....|...
gi 770593229 321 SSLGLMLASTVLI 333
Cdd:MTH00160 322 SLFGLILSSLLFL 334
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-333 2.69e-68

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 217.41  E-value: 2.69e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSII--LIQSGKNFF 78
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVM---SYCLKMNYsIIIFSILSVWVG 155
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNL-LLTLAILSILIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 156 ALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIF 235
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 236 ITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFM-----MSTNEIKWNFNMTKSNLL 310
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQFENTKPMTL 325

                        330       340
                 ....*....|....*....|...
gi 770593229 311 tysLGIMTMISSLGLMLASTVLI 333
Cdd:MTH00105 326 ---LPTLIILSTMLLPLTPMLSI 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-332 3.16e-66

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 211.99  E-value: 3.16e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIIL--IQSGKNFF 78
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnaWNTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVM-SYCLKMNYSIIIFS-ILSVWVGA 156
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlMTSNSLNPTLLLTLaILSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 157 LGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFI 236
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 237 TLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFM-----MSTNEIKWNFNMTKSNLLT 311
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTItlppnTTNMMMKWRTKPKKNTLTA 326

                        330       340
                 ....*....|....*....|.
gi 770593229 312 yslgIMTMISSLGLMLASTVL 332
Cdd:MTH00112 327 ----TLTTLSTLLLPLSPMIL 343
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-332 1.81e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 197.07  E-value: 1.81e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIIL--IQSGKNFF 78
Cdd:MTH00070   7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInaWFTGEWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTV--MSYCLKMNYSIIIFSILSVWVGA 156
Cdd:MTH00070  87 MNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliQISHLLNSNLLIIMGLLSTLIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 157 LGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFI 236
Cdd:MTH00070 167 WGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMML 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 237 TLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFM-----MSTNEIKWNFNMTKSNLLT 311
Cdd:MTH00070 247 TLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLttspnTSNSKLYWRFKNKTNNLLS 326

                        330       340
                 ....*....|....*....|.
gi 770593229 312 yslgIMTMISSLGLMLASTVL 332
Cdd:MTH00070 327 ----LTIILSLMLLPITPTIL 343
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-332 2.67e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 191.56  E-value: 2.67e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIIL--IQSGKNFF 78
Cdd:MTH00135   7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnaWLTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYSIIIF-SILSVWVGAL 157
Cdd:MTH00135  87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITlGLTSTLVGGW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 158 GGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFIT 237
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 238 LLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISF-VAFMMSTNeikwNFNMT-----KSNLLT 311
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYaMTLTISPN----TLNGTtpwrlPSTQLT 322

                        330       340
                 ....*....|....*....|.
gi 770593229 312 YSLGIMTMISSLGLMLASTVL 332
Cdd:MTH00135 323 LPLAISTTATLMLLPLTPAIL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-327 8.45e-58

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 190.14  E-value: 8.45e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSiILIQSGKNFFW- 79
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNG-ALIQAWLSGSWs 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  80 --EETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYC--LKMNYSIIIFSILSVWVG 155
Cdd:MTH00041  86 inGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsnLLNSNILILCGILSVLVG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 156 ALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIF 235
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 236 ITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMTKSNLLTYSLG 315
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325

                        330
                 ....*....|..
gi 770593229 316 IMTMISSLGLML 327
Cdd:MTH00041 326 VILSILSSISIL 337
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-310 7.07e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 179.31  E-value: 7.07e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILiqsgknFFWE 80
Cdd:MTH00144   7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI------MYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 ETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCL---KMNYSIIIFSILSVWVGAL 157
Cdd:MTH00144  81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVGSI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 158 GGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNeNIINKFMIFIT 237
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKP-SYKTGLSIISL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 770593229 238 LLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMTKSNLL 310
Cdd:MTH00144 240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-332 7.69e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 177.08  E-value: 7.69e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIIL--IQSGKNFF 78
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLnaWTSGQWGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMS--YCLKMNYSIIIFSILSVWVGA 156
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 157 LGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFI 236
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 237 TLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFV-AFMMSTNEIKWNFNMTKSNLLTYSLG 315
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLtLLTLSPNQINMMSSWRTKSNSNLLVG 326

                        330
                 ....*....|....*..
gi 770593229 316 IMTMISSLGLMLASTVL 332
Cdd:MTH00200 327 LLLLLSILGLPLTPQLL 343
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-317 1.28e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 168.31  E-value: 1.28e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSGKNFFwe 80
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS-- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 etnNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYSIIIFSILSVWVGALGGL 160
Cdd:MTH00197  79 ---LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 161 NQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLS 240
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 770593229 241 LGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMTKSNLLTYSLGIM 317
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMM 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 2.01e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.34  E-value: 2.01e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQsgknFFWE 80
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW----SFPS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 ETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYSIIIFSI--LSVWVGALG 158
Cdd:MTH00011  85 LLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaaMSALAGGLG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 159 GLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITL 238
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 770593229 239 LSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMTKSNLL 310
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTK 316
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-292 4.60e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 116.37  E-value: 4.60e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMmGSMLSVSSNSWLGVWMGLEINMLSFIPLMS-NSKNTMMNETSIKYFIIQALASTMLLFSIILI-------- 71
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsln 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  72 --QSGKNFFWEETNN----ISMLLIISSLMMKLGAAPFHFWFPEI-----------MSASSWMNCFILMTwqKIAPMTVM 134
Cdd:COG1007  185 laGIAAALAAGGANSplllLGLVLVLAGLAFKLSAVPFHMWTPDVyegaptpvtafLATAPKIAAFAALL--RLLVEAFP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 135 SYCLKMNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMA------SMGVNEIMwqLYFIVYSMLSL----V 204
Cdd:COG1007  263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaagtPLGVSAAL--FYLLAYLFMNLgafaV 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 205 MTMMfnENKLFFMNQLFNYNNENIINK---FMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLY 281
Cdd:COG1007  341 ILLL--SRKGGEAEEIEDLAGLARRSPllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418

                        330
                 ....*....|.
gi 770593229 282 YYLRISFVAFM 292
Cdd:COG1007  419 YYLRVVKAMYF 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-276 2.34e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   17 SNSWLGVWMGLEINMLSFIPLM-SNSKNTMMNETSIKYFIIQALASTMLLFSIILI--QSGKNFFWEE-----------T 82
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   83 NNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMN-CFILMTWQKIAPMTVMSYCL-------KMNYSIIIFSILSVWV 154
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSLlylpsspFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  155 GALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIM----WQLYFIVYSMLS-----LVMTMMFNENKLFFMNQLFNYNN 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSaglflCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 770593229  226 ENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILT 276
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-286 1.25e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 110.89  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   9 MGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMN-ETSIKYFIIQALASTMLLFS---------------IILIQ 72
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGcallcgttgglhlsyINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  73 SGKNFFWEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIApmtVMSYCLKMNYSIIIF---SI 149
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG---IFSILVSIGLNVNILligGL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 150 LSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEI-------MWQLYFIVYSMLSLVMTMMFNENKLFFMnQLFN 222
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFesiqaslVYLFIYIIMSICVFSIILALNVYKNLII-EFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 770593229 223 YNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRI 286
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-292 1.81e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.84  E-value: 1.81e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  10 GSMLSVSSNSWLGVWMGLEINML-SFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILI----------QSGKNFF 78
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELLSLpLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgslsfaGIAKALA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  79 WEETNN----ISMLLIISSLMMKLGAAPFHFWFPEI-----------MSASSWMNCFILMTwqKIAPMTVMSYCLKMNYS 143
Cdd:PRK05777 195 DGSGNSllllFGLVFLLVGLAFKLSAVPFHMWTPDVyegaptpvtafLATAPKIAAFAVLL--RLLVVAFGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 144 IIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMA------SMGVNEIMwqLYFIVYSMLSL----VMTMMfnENK 213
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVglaagtAEGYSAVL--FYLLAYLFMTLgafgVISLL--RRK 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 214 LFFMNQLFNYNNENIINKFMIF---ITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVA 290
Cdd:PRK05777 349 GGEAESISDFAGLSKRSPLLAAvmtIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428


                 ..
gi 770593229 291 FM 292
Cdd:PRK05777 429 YF 430
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-323 3.08e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.11  E-value: 3.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   10 GSMLSVSSNSWLGVWMGLEINMLSFIPLMSNS-KNTMMNETSIKYFIIQALASTMLLF--SIILIQSG-------KNFFW 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFgiSLIYGFTGslnfedlLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   80 EETNNISML-----LIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAP----MTVMSYCLKMNYSII----- 145
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavfLRLFLYILFGFSEAWqifla 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  146 IFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTM----------MFNENKLF 215
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLgafgvlsllrSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  216 FMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFMMST 295
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433

                         330       340
                  ....*....|....*....|....*...
gi 770593229  296 NEIKWNFNMTKSNLLTYSLGIMTMISSL 323
Cdd:TIGR01770 434 ERRIPSNPQSKAQSLLLSISALFILFLG 461
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-286 1.55e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.48  E-value: 1.55e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   9 MGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMN-ETSIKYFIIQALASTMLLFSIILIQ--SGKNFFWEE---- 81
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALLYglTGETSIQGInsil 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  82 TNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYSIIIFSILSVWVGALGGLN 161
Cdd:MTH00199 188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALN 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 162 QTSLRQLMAYSSISHIGWMMASMGVN---EIMWQL-YFIVYSMLSLVMTMMFNENKLF--FMNQLFNYNNENIINKFMIF 235
Cdd:MTH00199 268 QTKIKRLLAYSGIGHMGFILFGVAIGsfeSIQASLiYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPVIALTLA 347

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 770593229 236 ITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRI 286
Cdd:MTH00199 348 LTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-286 1.49e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 83.37  E-value: 1.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   9 MGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMN---------ETSIKYFIIQALASTMLLFSIIL--------- 70
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  71 ----IQSGKnffwEETNNISM-------LLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLK 139
Cdd:MTH00198 279 mlgtILSAT----LETTNIELrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVI 354

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 140 MNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMM--ASMGVNEIM-----WQLYFIVYSMLSLVMTMMFNE- 211
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigVSAGTYESLqaswtYAVTYLVSALASFTVICTLEEf 434

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 212 -----------NKLFFMNQLFNYNNENIINK------FMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTI--- 271
Cdd:MTH00198 435 gtrtptsrqrdGSFGNYNLVRRLVDLTILSRgqpyiaFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyyl 514

                        330
                 ....*....|....*....
gi 770593229 272 ----MVILTIITLYYYLRI 286
Cdd:MTH00198 515 valfAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-290 1.68e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   3 FLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILI-QSGKNFFWEE 81
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLyGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  82 -----------TNNISMLLIISSLMMKLGAAPFHFWFPEIMS-ASSWMNCF------------ILMTWQKIAPMTVMSYc 137
Cdd:COG0651  192 laarlaeldpgLLLAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALlsglltkvgvyaILRVLTLLFGADPALF- 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 138 lkMNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNE---IMWQLYFIVYSMlsLVMTMMF----- 209
Cdd:COG0651  271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTplgLAGALFHLLNHA--LAKALLFlaaga 346

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 210 -----NENKLFFMNQLFNYnneNIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYL 284
Cdd:COG0651  347 ieratGTRDLDKLGGLGKR---MPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFV 423


                 ....*.
gi 770593229 285 RISFVA 290
Cdd:COG0651  424 RIFGRA 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-292 7.58e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 75.13  E-value: 7.58e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  48 ETSIKYFIIQALASTMLLFSIILIQSGKN------------FFWEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSAS- 114
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLYGQYGtlnmaylavkmsENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAp 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 115 SWMNCFILMTWQ----KIAPMTVMSYCLKMN-----YSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWM----- 180
Cdd:PRK08376 252 SSISAMLLVIKQaglyALARVLFSIYGPAINlatvgWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglg 331

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 181 ----------MASMGVNEIMWQLYFIV-----YSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLSLGGLP 245
Cdd:PRK08376 332 vglaalgdpaMASYGEIALAGGIYHIVnhalyKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 770593229 246 PFLGFLPKWMVMQTMMEMGlSMMTTIMVILTIITLYYYLRISFVAFM 292
Cdd:PRK08376 412 PFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFF 457
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-286 9.37e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.80  E-value: 9.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMM-NETSIKYFIIQALASTMLLFSIIL---IQSGKN 76
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRsNEATMKYLLMGGASSSILVYGFSWlygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  77 FFWEETNN-------------ISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVMSYCLKMNYS 143
Cdd:CHL00049 194 ELQEIVNGlintqmynspgisIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 144 II---------IFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLY-FIVYSMLSLVMTM-MFNEN 212
Cdd:CHL00049 274 FSsnewhllleILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYAsMITYMLFYIFMNLgTFACI 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 213 KLFFM----NQLFNYNNENIINKFMIF---ITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLR 285
Cdd:CHL00049 354 VLFGLrtgtDNIRDYAGLYTKDPFLALslaLCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLK 433


                 .
gi 770593229 286 I 286
Cdd:CHL00049 434 I 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-292 5.12e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 63.36  E-value: 5.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  27 LEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILI----------QSGKNFFWEETNNISMLLIISSLMM 96
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLygvtgtlnmaDLAGALAENPTVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  97 KLGAAPFHFWFPEIMS-ASSWMNCFILMTWQKIA---------PMTVMSYCLKMNYSIII--FSILSVWVGALGGLNQTS 164
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPaAPPVVTALLSGLVTKVAvyaliriyfTVFGGDFRFALGLGWLLavLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 165 LRQLMAYSSISHIGWMMASMGVN---EIMWQLYFIVYSML---SLVMT-----MMFNENKLFFMNQLFNynnENIINKFM 233
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLtplALAAGLLHLLHHALmkgALFLAagaieVTYGTRRLSELSGLGR---RMPLTAAA 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 770593229 234 IFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFM 292
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
144-291 1.00e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 62.66  E-value: 1.00e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 144 IIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNE---IMWQLYFIVYSMLslVMTMMF----------N 210
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTpagINGAIFYLVHDMV--VKTALFliagslvrltG 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 211 ENKLFFMNQLfnYNNENIINkFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVA 290
Cdd:PRK12663 353 YRSLQYLGGL--YRKEPLFG-ALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429


                 .
gi 770593229 291 F 291
Cdd:PRK12663 430 Y 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-291 8.53e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 59.60  E-value: 8.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 144 IIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVY--------SMLSLVMTMMFNENKLF 215
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGTR 377

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 770593229 216 FMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAF 291
Cdd:PRK12667 378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLF 453
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
48-292 1.26e-08

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 55.81  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  48 ETSIKYFIIQALASTMLLFSIIL---------IQSGKNFFWEETNN----ISMLLIISSLMMKLGAAPFHFWFPEIMSAS 114
Cdd:PRK06277 150 KAALKYMILGNVAGSILLLGIGFllastgtlnITDIHNALLVNPTSpviyGGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 115 SWMNCFILMTWQKIAPMTVMSYCLKMNYS----------IIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASM 184
Cdd:PRK06277 230 KPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqgvLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 185 G--------------VNEImwqlyfIVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGF 250
Cdd:PRK06277 310 AlgtplgivagifhaINHV------IYKSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGF 383

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 770593229 251 LPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVAFM 292
Cdd:PRK06277 384 QSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
PRK12650 PRK12650
DUF4040 family protein;
78-291 1.55e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.20  E-value: 1.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  78 FWEE----TNNISMLLIISSLMmKLGAAPFHFWFPEIMSASSWMNCFIlmtwqKIAPMTVMSYCLKMNYSIIiFSILSVW 153
Cdd:PRK12650 199 VWAEkpglTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFL-----HAAAVVKAGIYLLLRFSPV-FHDVAVW 271

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 154 -------------VGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSML------SLVMTM--MFNEN 212
Cdd:PRK12650 272 nwlliivgmitalMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAhalfksSLFMLIgvVDHQA 351

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 213 KLFFMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMME-----MGLSMMTTIMVILTIITLYYYLRIS 287
Cdd:PRK12650 352 GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEapggnAGVVLLLVGAALGAVFTFAYSARLV 431


                 ....
gi 770593229 288 FVAF 291
Cdd:PRK12650 432 LGAF 435
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
47-297 1.93e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.44  E-value: 1.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  47 NETSIKYFIIQALASTMLLFSIILIQ--SGKNFFWEETNN-----------ISMLLIISSLMMKLGAAPFHFWFPEIMSA 113
Cdd:PRK02504 160 NEAALKYLLIGAASSAIFLYGSSLLYglSGGSTQLSAIALalitspslglaLALVFVIAGIAFKISAVPFHQWTPDVYEG 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 114 SSWMNCFILMTWQKIAPMTVMSYCLKMNYSII------IFSILSVWVGALG---GLNQTSLRQLMAYSSISHIGWMMASM 184
Cdd:PRK02504 240 SPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFdeqwklLFTALAILSMVLGnvvALAQTSMKRMLAYSSIGQAGFVMIGL 319

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 185 GVNEIMWQLYFIVYSMLSLVMTM-MFNENKLFFM----NQLFNYNNENIINKFMIF---ITLLSLGGLPPFLGFLPKWMV 256
Cdd:PRK02504 320 VAGTEAGYASMVFYLLAYLFMNLgAFACVILFSLrtgtDQISDYAGLYQKDPLLTLglsLCLLSLGGIPPLAGFFGKIYL 399

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 770593229 257 MQTMMEMGLSMMTTIMVILTIITLYYYLRisfVAFMMSTNE 297
Cdd:PRK02504 400 FWAGWQAGLYLLVLVGLVTSVISIYYYIR---VIKMMVVKE 437
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-286 2.57e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.39  E-value: 2.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   2 LFLSSLMMGSMLSVSSNSWLGVWMGLEINMLS--FIPLMSNSKNtmmNETSIKYFIIQALASTMLLFSIILI-------- 71
Cdd:PRK08668 102 MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIyaktgtfd 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  72 -QSGKNFFWEETNN----ISMLLIISSLMMKLGAAPFHFWFPEIMSASS-------------------WMNCFILMTWQK 127
Cdd:PRK08668 179 fADISQGLINDTSTgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygfLLVLYVLPGTKL 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 128 IAPMTVMSYCLKMNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGvneIMWQLYF-----------I 196
Cdd:PRK08668 259 FSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLG---LGTSLGFagglfhvfnhaL 335

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 197 VYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILT 276
Cdd:PRK08668 336 FKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGS 415

                        330
                 ....*....|
gi 770593229 277 IITLYYYLRI 286
Cdd:PRK08668 416 IGSFLYVFRP 425
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-325 8.89e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 50.33  E-value: 8.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 142 YSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNE---IMWQLYFIVYSMLslVMTMMFnenklFFMN 218
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTesgMIGAIYYLIHDMI--VKAALF-----LLIG 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 219 QLFNYNNENIINKF------------MIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRI 286
Cdd:PRK07691 349 IMIKITGTTDLKKMgglikrypvlgwMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 770593229 287 SFVAFMMSTNEIKWNFNMTKSNLLTYSLGIMTMISSLGL 325
Cdd:PRK07691 429 FLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITILYGL 467
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-333 3.48e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.27  E-value: 3.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   3 FLSSLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILI----------Q 72
Cdd:PRK06589 121 FFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILiytktgnldfV 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  73 SGKNFfwEETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFI---------LMTWQKIAPMT----VMSYCLK 139
Cdd:PRK06589 201 SGGLF--SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsYLQRIFA 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 140 MNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMA--------SMGVNEIMWQLYFIVYSMLSLVMTMMFNE 211
Cdd:PRK06589 279 EFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLsafiltpkALGAAILHLVSHSFAKICLFYSMGSIYSL 358

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 212 NKLFFMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLS----MMTTIMVILTIITLYYYLRIS 287
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPwlsiIVMLVVIASSILSALYLLKIL 438

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 770593229 288 FVAFMMSTNEikwNFNMTKSNLLTYSLGIMTMISSLGLMLASTVLI 333
Cdd:PRK06589 439 SSIYKPSLSE---NSFITKSLPYLMQISVITCCCALTLFYFIQILI 481
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-291 2.54e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.73  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 148 SILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNE-------IMWQLYFI-VYSMLSLVMTMMFNENKLFFMNQ 219
Cdd:PRK12665 280 ALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvaglsgaIYYVAHHItVQTTLFLVVGLIERQAGSSSLRR 359

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 770593229 220 LFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIM---VILTIITLYYYLRISFVAF 291
Cdd:PRK12665 360 LGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVaggVVTSLLTLYAVARVWTKAF 434
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 154-291 2.60e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 2.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 154 VGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIV---YSMLSLVMT-----MMFNENKLFFMNQLFnynn 225
Cdd:COG1009  288 FAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLthaFFKALLFLGagsviHATGTRDIRKMGGLR---- 363

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 770593229 226 eniinKFM------IFITLLSLGGLPPFLGFLPKWMVMQTMMEMG-LSMMTTIMVILT-IITLYYYLRISFVAF 291
Cdd:COG1009  364 -----KKMpitaitFLIGALSLAGIPPFAGFFSKEAILEAALEAGgLGPLLLAVALLGaFLTAFYSFRLFFLVF 432
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-181 2.61e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 45.70  E-value: 2.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   50 SIKYFIIQALASTMLLFSIILI--QSGKNFFWEETNNISMLLIISSLMM---------KLGAAPFHFWFPEIMSASSWMN 118
Cdd:TIGR01972 158 AMKFFLYTLAGSLLMLLAILGLyfLGGGTFDLLELLNLPLPFGVQTWLFlaffiafavKVPLFPLHTWLPDAHVEAPTAG 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 770593229  119 CFILM-TWQKIAPMTVMSYCLKM--------NYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMM 181
Cdd:TIGR01972 238 SVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-280 1.57e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   2 LFLSSlMMGSMLSVSSNSWLGVWMGLEInmLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSGKNFFW-- 79
Cdd:PRK08667 119 LFILS-MLGVVASANTFSFLFFWEIMAL--SSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEls 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  80 -----EETNNISMLLIISSLMMKLGAAPFHFWFPEIMSASSwMNCFILMTWQKIAP---------MTVMSYCLKMNYSII 145
Cdd:PRK08667 196 plgasAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASP-SNVSALMSGVMLKVavyglvrflMDVLSPELWWGVLIL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 146 IFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNEIMWQLYFIVYSMLSLVMTMMFNENKLFFMNQLF---- 221
Cdd:PRK08667 275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFltag 354

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 770593229 222 ---------NYNNENIINKFM------IFITLLSLGGLPPFLGFLPKWMVMQTMMEmGLSMMTTIMVILTIITL 280
Cdd:PRK08667 355 svvhatgtrNIEKMGGLVKLMpytsalFLVGAVSIAALPPFNGFASELLLYESFFQ-SFSVADPLIKILLFSVL 427
PRK12646 PRK12646
DUF4040 family protein;
7-286 2.54e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 39.74  E-value: 2.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   7 LMMGSMLS-VSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNET-SIKYFIIQALASTMLL--FSIILIQSGKNFFWE-- 80
Cdd:PRK12646 118 LFMFSMIGiVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFgAIQSFMITVFGGLALLvgFIMLYIMTGTNNITEil 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  81 -ETNNISM--LLIISSLMMKLGAA------PFHFWFPEIMSASSWMNCFI---------LMTWQKIAPmtVMSYCLKMNY 142
Cdd:PRK12646 198 gQADHIKNhgLFIPMIFMFLLGAFtksaqfPFHIWLPRAMAAPTPVSAYLhsatmvkagIFLLFRFTP--LLGLSNMYIY 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 143 SIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGV--------NEIMWQLY-FIVYSMLSLVMTMMFNENK 213
Cdd:PRK12646 276 IVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIgggyaqhqQDAIASIYvFVLFAALFHLMNHAIFKCA 355

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 214 LFFMNQLFNYNN-----------ENIINKFMIFITL--LSLGGLPPFLGFLPKWMVMQTMMEMG---------LSMMTTI 271
Cdd:PRK12646 356 LFMGVGIIDHEAgtrdirilsgmRQLFPKMNLVMTIaaLSMAGVPFLNGFLSKEMFLDALTQTGqlsqfslisMIIIVFI 435

                        330
                 ....*....|....*
gi 770593229 272 MVILTIITLYYYLRI 286
Cdd:PRK12646 436 GVIASIFTFTYALYM 450
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-262 3.26e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 3.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  17 SNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSG-------------KNFFWEETN 83
Cdd:PRK12662 129 SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAItgtlnmgdmfliiQDLPTNRAI 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  84 NISMLLIISSLMMKLGAAPFHFWFPEIMSAS-SWMNCFILMTWQKIAPMTV------------MSYCLKMNYSIIIFSIL 150
Cdd:PRK12662 209 QIGVLFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanfVFTTLPFNNVFMILAAL 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 151 SVWVGALGGLNQTSLRQLMAYSSISHIGWMMASMGVNeimwqlyfiVYSMLSLVMTMMFN----ENKLFFMNQLFNYNNE 226
Cdd:PRK12662 289 AIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLN---------TYYGLAAAVAYIVNhsivKSALFMVSGSISYHFG 359

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 770593229 227 NI-------INKFMIFITL------LSLGGLPPFLGFLPKWMVMQTMME 262
Cdd:PRK12662 360 TTkledclnLWKSMPKITLafvllsLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 85-186 4.39e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.58  E-value: 4.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  85 ISMLLIISSLMMKLGAAPFHFWFPEIMS-ASSWMNCFILMTWQKIAPMTVMSYCLKMNYS---------IIIFSILSVWV 154
Cdd:PRK08676 207 ASFLFIFIGFLAKSGLVPFHTWLPAAYAkAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeqfsnvLIGLGIFSIAV 286

                         90       100       110
                 ....*....|....*....|....*....|..
gi 770593229 155 GALGGLNQTSLRQLMAYSSISHIGWMMASMGV 186
Cdd:PRK08676 287 AAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGI 318
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-297 5.04e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.59  E-value: 5.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   1 MLFLSsLMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNETSIKYFIIQALASTMLLFSIILIQSG------ 74
Cdd:PRK08377 112 MLFLL-LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGAtgtlnm 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  75 ------KNFFWEETNNISMLLIISSLMMKLGAAPFHFWFPE----------IMSASSWMNCFILMTWQKIAPMTVMSYCL 138
Cdd:PRK08377 191 ahiaqlAGTIDPTVAQVGLALLIFGLAVEAELFPLNAWAPDayqaaphpitVMFSAFVVKAGLYAMARILYLMQNANGWS 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 139 KMNYSIIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMASM------GVNEIMWQL--YFIVYSMLSLVMTMMFN 210
Cdd:PRK08377 271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALalgtqaGVDAGVFHMinHAIVKALLFLAVGYVGI 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 211 ENKLFFMNQLFNYNNENIINKFMIFITLLSLGGLPPFLGFLPKWMVMQTMMEMGLSMMTTIMVILTIITLYYYLRISFVA 290
Cdd:PRK08377 351 TLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTM 430


                 ....*..
gi 770593229 291 FMMSTNE 297
Cdd:PRK08377 431 WFKGEGE 437
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 7-310 7.53e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.54  E-value: 7.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229   7 LMMGSMLSVSSNSWLGVWMGLEINMLSFIPLMSNSKNTMMNetsikYFIIQALASTMLLFSiiliqsgknffweetnniS 86
Cdd:MTH00091   3 LSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNY-----FVLQESLGLLFLLFS------------------F 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229  87 MLLIISSLMMKLGAAPFHFWFPEIMSASSWMNCFILMTWQKIAPMTVM-SYCLKMNYSIIIFSILsvwVGALGGLNQTSL 165
Cdd:MTH00091  60 GYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLlQFFSKNFFFLLLFGLL---ICFFQMFLLKSY 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593229 166 RQLMAYSSISHIGWMMASMgvneimwqlyfiVYSMLSLVMTMMFNENKLFFMNQLFNYNNENIINKFMifiTLLSLGGLP 245
Cdd:MTH00091 137 KNLLILSSTESFNWLILSF------------FFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWE---TLLVFMNLP 201

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 770593229 246 PFLGFLPKWMVMQTMMemglSMMTTIMVILTIITLYYYLRISFVAFMMSTNEIKWNFNMTKSNLL 310
Cdd:MTH00091 202 FSVTFFVKIFSLSEIL----KVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFF 262
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 144-182 7.65e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 37.75  E-value: 7.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 770593229 144 IIIFSILSVWVGALGGLNQTSLRQLMAYSSISHIGWMMA 182
Cdd:COG1008  278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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