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Conserved domains on  [gi|770593253|gb|AJW76379|]
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cytochrome b (mitochondrion) [Proscopia sp. HS-2014]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 630.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  13 KIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVD 172
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 173 NPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTMNPYILG 252
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTT 332
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 770593253 333 VIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLN 366
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 630.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  13 KIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVD 172
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 173 NPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTMNPYILG 252
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTT 332
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 770593253 333 VIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLN 366
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-365 2.84e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 348.32  E-value: 2.84e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   5 MTKKNPMNKIIN------------NSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICR 72
Cdd:COG1290    1 MSTTKKASGLADwlderlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  73 EVNSGWMLRTIHANGASMFFTCIYLHIGRGMYYGSYvysK-----TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVI 147
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 148 TNLMSAMPYIENTLVQWIWGGFAVDNPTLTRFFSIHFM-LPFVIMGLSMSHLMFLHQTGSNNPMG----MNSNTDKIPFH 222
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 223 PYFNFKDLITLMLLMMIMVTMSTMNPyiLGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALMSSIM 300
Cdd:COG1290  238 PYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 770593253 301 ILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTTVIMLTWIGKQPveEPYIKTGQILTMMYFLYFML 365
Cdd:COG1290  316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.01e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 249.59  E-value: 3.01e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  10 PMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  90 MFFTCIYLHIGRGMYYGSYV--YSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 770593253 168 GFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.41e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 230.73  E-value: 5.41e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   19 LIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   99 IGRGMYYGSYVYS--KTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 770593253  177 TRFFSIHFMLPFVIMGLSMSHLMFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-340 3.71e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  240 MVTMSTMNPYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKF- 318
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125

                          90       100
                  ....*....|....*....|..
gi 770593253  319 YPMNKIMFWMMTTTVImltWIG 340
Cdd:TIGR01156 126 RPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 630.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  13 KIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVD 172
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 173 NPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTMNPYILG 252
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTT 332
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 770593253 333 VIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLN 366
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 581.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00145
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 580.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLNIHVSKTWDKI 376
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNI 376
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 565.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   5 MTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  85 ANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 165 IWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 245 TMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 770593253 325 MFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 4-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 562.35  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   4 SMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTI 83
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  84 HANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQ 163
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 164 WIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTM 243
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 244 STMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNK 323
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 770593253 324 IMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 558.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLNIHVSKTWD 374
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00100
cytochrome b; Provisional
 4-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 553.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   4 SMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTI 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  84 HANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 164 WIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTM 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 244 STMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNK 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 770593253 324 IMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFL 361
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 550.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLNIHVSKTWDKIT 377
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 7-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 530.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   7 KKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHAN 86
Cdd:MTH00034   6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  87 GASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIW 166
Cdd:MTH00034  86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 167 GGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTM 246
Cdd:MTH00034 166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 247 NPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMF 326
Cdd:MTH00034 246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 770593253 327 WMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00034 326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-376 7.05e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 489.05  E-value: 7.05e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLNIHVSKTWDKI 376
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDL 376
CYTB MTH00053
cytochrome b; Provisional
 1-365 1.40e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 485.75  E-value: 1.40e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   1 MKKSMTKKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIM 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 241 VTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 770593253 321 MNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00022
cytochrome b; Validated
 7-367 4.46e-169

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 476.89  E-value: 4.46e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   7 KKNPMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHAN 86
Cdd:MTH00022   5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  87 GASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIW 166
Cdd:MTH00022  85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 167 GGFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTM 246
Cdd:MTH00022 165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 247 NPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMF 326
Cdd:MTH00022 245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 770593253 327 WMMTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFMLNI 367
Cdd:MTH00022 325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00033
cytochrome b; Provisional
 17-365 1.34e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 389.68  E-value: 1.34e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  17 NSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  97 LHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVDNPTL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 177 TRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMStMNPYI---LGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRIetlLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 254 PENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTTV 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350
                 ....*....|....*....|....*....|...
gi 770593253 334 IMLTWIGKQPV-EEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-365 7.70e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 361.18  E-value: 7.70e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  13 KIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 173 NPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLmMIMVTMSTMNPYILG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFW-LVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKfypMNKIMFWMMTTT 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNK---LNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 770593253 333 VIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-365 2.84e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 348.32  E-value: 2.84e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   5 MTKKNPMNKIIN------------NSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICR 72
Cdd:COG1290    1 MSTTKKASGLADwlderlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  73 EVNSGWMLRTIHANGASMFFTCIYLHIGRGMYYGSYvysK-----TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVI 147
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 148 TNLMSAMPYIENTLVQWIWGGFAVDNPTLTRFFSIHFM-LPFVIMGLSMSHLMFLHQTGSNNPMG----MNSNTDKIPFH 222
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFH 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 223 PYFNFKDLITLMLLMMIMVTMSTMNPyiLGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALMSSIM 300
Cdd:COG1290  238 PYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 770593253 301 ILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTTVIMLTWIGKQPveEPYIKTGQILTMMYFLYFML 365
Cdd:COG1290  316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 11-365 6.61e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 261.84  E-value: 6.61e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  11 MNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASM 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  91 FFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFA 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 171 VDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSNNPM-GMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTMNPY 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 250 ILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLMSSIMILMIMPlynkmTFRGNKFYPM-NKIMFWM 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP-----TFNGSSVYSVwRQVNFWL 314

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 770593253 329 MTTTVIMLTWIGKQPVEEPYIKTGQILTMMYFLYFML 365
Cdd:MTH00046 315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.01e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 249.59  E-value: 3.01e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  10 PMNKIINNSLIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  90 MFFTCIYLHIGRGMYYGSYV--YSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 770593253 168 GFAVDNPTLTRFFSIHFMLPFVIMGLSMSHLMFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.41e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 230.73  E-value: 5.41e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   19 LIDLPTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   99 IGRGMYYGSYVYS--KTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 770593253  177 TRFFSIHFMLPFVIMGLSMSHLMFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 1.38e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.58  E-value: 1.38e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 208 NPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMSTMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 770593253 288 KLGGVIALMSSIMILMIMPLYNKMTFRgNKFYPMNKIMFWMMTTTVIMLTWIGKQPVEEPYIKTGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 3.01e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.16  E-value: 3.01e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253   89 SMFFTCIYLHIGRGMYYGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  167 GGFAVDNPTLTRFFSIHFM-LPFVIMGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLMLLMMIMVTMST 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 770593253  246 MNPYILGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 4.04e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 4.04e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  259 PANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTTVIMLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 770593253  339 IGKQPVEEPYIKTGQILTMMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 2.19e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 126.36  E-value: 2.19e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  23 PTPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLHIGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 103 MYYGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVDNPTLTRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 770593253 181 SIH-FMLPFVIMGLSMSHLMFLHQTGSNNPM 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 3.35e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 109.81  E-value: 3.35e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  25 PTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLHIGRGMY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 105 YGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAMPYIENTLVQWIWGGFAVDNPTLTRFFSI 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 770593253 183 H-FMLPFVIMGLSMSHLMFLHQTGSNNPM 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 209-340 2.79e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 2.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253 209 PMGMNSNTDKIPFHPY-FNFKDLITLMLLMMIMVTMSTMNPYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:COG5679   20 EKGMGHNYYGEPAWPNdLLYIFPVVILGTIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPN 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 770593253 288 KLGGVIALMSSIMILMIMPLYNKMTFRGNKFYPMNKIMFWMMTTTVIMltWIG 340
Cdd:COG5679   95 KLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTL--WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 241-306 9.13e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.02  E-value: 9.13e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 770593253 241 VTMSTMNPYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMP 306
Cdd:CHL00058  52 VGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVP 112
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-340 3.71e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593253  240 MVTMSTMNPYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPLYNKMTFRGNKF- 318
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125

                          90       100
                  ....*....|....*....|..
gi 770593253  319 YPMNKIMFWMMTTTVImltWIG 340
Cdd:TIGR01156 126 RPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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