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Conserved domains on  [gi|887513774|gb|AKQ49224|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Bryodema miramae miramae]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 7.92e-139

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 394.91  E-value: 7.92e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLID 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 165 SFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 887513774 245 SLVFLGGDFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 7.92e-139

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 394.91  E-value: 7.92e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLID 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 165 SFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 887513774 245 SLVFLGGDFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
13-302 1.24e-90

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 272.42  E-value: 1.24e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   13 FLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   93 SIFPYMTYM--CSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDSFDVFN 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  171 FMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFSLVFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 887513774  251 G------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 9.65e-85

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 258.14  E-value: 9.65e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   4 DLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVF 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  84 NLMISLFIWSIFPY--MTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 162 LIDSFDVFNFMNLQI-YCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 241 SMLFSLVFLGG--------DFYSFL----FFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKV 308
Cdd:COG1005  247 SALATTLFLGGwlgpfpilPLGGLPgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVL 326


                 ...
gi 887513774 309 MFL 311
Cdd:COG1005  327 LFG 329
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.33e-39

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 142.15  E-value: 1.33e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  15 LIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFnLMISLFIWSI 94
Cdd:NF040610  19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIV-AMGSVFLMLV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  95 -----------FPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLI 163
Cdd:NF040610  98 aipfgaviingVEYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 164 DSFDVFNFMNLQIYCWFIvFCFPLS-LAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSM 242
Cdd:NF040610 178 GSLNIVEIVEAQSPIWFA-FLQPIGfIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSF 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 243 LFSLVFLGG----------DFYSFL-----FFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLK 307
Cdd:NF040610 257 LVVLLFLGGwnlpgfvtdiPVLGIIlptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALG 336


                 ...
gi 887513774 308 VMF 310
Cdd:NF040610 337 LYL 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 7.92e-139

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 394.91  E-value: 7.92e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLID 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 165 SFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLF 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 887513774 245 SLVFLGGDFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-307 3.57e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 342.40  E-value: 3.57e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   6 LMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNL 85
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  86 MISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDS 165
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 166 FDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFS 245
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 887513774 246 LVFLGGDFY--SFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLK 307
Cdd:MTH00225 241 ILFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIIL 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-306 2.40e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 325.29  E-value: 2.40e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   6 LMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  86 MISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDS 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 166 FDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFS 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 887513774 246 LVFLGGDF-----YSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGL 306
Cdd:MTH00143 241 VLFFGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 2-313 9.75e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 298.84  E-value: 9.75e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   2 MYDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  82 VFNLMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 162 LIDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMS 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 887513774 242 MLFSLVFLGGDFY-------SFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMFLIS 313
Cdd:MTH00071 241 TLSTILFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGI 319
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-310 1.69e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 295.28  E-value: 1.69e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLID 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 165 SFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLF 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 887513774 245 SLVFLGGDFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00218 241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-306 7.49e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 290.88  E-value: 7.49e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLID 164
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 165 SFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLF 244
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 887513774 245 SLVFLGGDfYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGL 306
Cdd:MTH00195 241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAI 301
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-310 1.30e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 290.76  E-value: 1.30e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   7 MFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNLM 86
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  87 ISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDSF 166
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 167 DVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFSL 246
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 887513774 247 VFLGG-------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00104 241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMT 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-317 1.74e-97

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 290.72  E-value: 1.74e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   3 YDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPV 82
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  83 FNLMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 163 IDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSM 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 243 LFSLVFLGGDFYSFLFF--------IKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMFLISY 314
Cdd:MTH00040 241 LSVILFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                 ...
gi 887513774 315 LNF 317
Cdd:MTH00040 321 PNY 323
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-306 3.67e-96

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 287.18  E-value: 3.67e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   2 MYDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  82 VFNLMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 162 LIDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMS 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 887513774 242 MLFSLVFL-------GGDFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGL 306
Cdd:MTH00111 241 TLTTILFLnpstlnlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSM 312
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-310 6.71e-94

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 281.49  E-value: 6.71e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   1 MMYDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFS 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  81 PVFNLMISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 161 LLIDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 887513774 241 SMLFSLVFLGGDFYSFL-------FFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00134 241 NTLSAILFLGASHIPTLpelttinLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAF 317
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 8-311 8.19e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 273.19  E-value: 8.19e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   8 FILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNLMI 87
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  88 SLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDSFD 167
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 168 vFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSmLFSLV 247
Cdd:MTH00010 165 -FSKIIMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMS-LFTSV 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 887513774 248 FLGGDFYSFLF-----FIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMFL 311
Cdd:MTH00010 243 FFTSFIPSIFIsdlmlILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
NADHdh pfam00146
NADH dehydrogenase;
13-302 1.24e-90

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 272.42  E-value: 1.24e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   13 FLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   93 SIFPYMTYM--CSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDSFDVFN 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  171 FMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFSLVFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 887513774  251 G------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 9.65e-85

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 258.14  E-value: 9.65e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   4 DLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVF 83
Cdd:COG1005    7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  84 NLMISLFIWSIFPY--MTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIL 161
Cdd:COG1005   87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 162 LIDSFDVFNFMNLQI-YCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFM 240
Cdd:COG1005  167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 241 SMLFSLVFLGG--------DFYSFL----FFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKV 308
Cdd:COG1005  247 SALATTLFLGGwlgpfpilPLGGLPgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVL 326


                 ...
gi 887513774 309 MFL 311
Cdd:COG1005  327 LFG 329
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 5-310 7.05e-84

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 255.81  E-value: 7.05e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMT--YMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:MTH00054  81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 163 IDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSM 242
Cdd:MTH00054 161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 887513774 243 LFSLVFLGGDFYSF----------LFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKVMF 310
Cdd:MTH00054 241 FGVILFLGGWLVISgptsyfsnfvWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGF 318
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-306 1.46e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 255.43  E-value: 1.46e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   1 MMYDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFS 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  81 PVFNLMISLFIWSIFPYM--TYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 159 LILLIDSFDVFNFMNLQI-YCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 887513774 238 IFMSMLFSLVFLGG--------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGL 306
Cdd:MTH00216 241 ILMSCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-297 1.03e-78

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 242.79  E-value: 1.03e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   5 LLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFN 84
Cdd:PRK06076   9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  85 LMISLFIWSIFPYMTY--MCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL 162
Cdd:PRK06076  89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 163 IDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSM 242
Cdd:PRK06076 169 AGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 887513774 243 LFSLVFLGG----------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSL 297
Cdd:PRK06076 249 LITTLFLGGwlppfplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 2-310 2.08e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 214.50  E-value: 2.08e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   2 MYDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  82 VFNLMISLFIWSI--FPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSL 159
Cdd:MTH00029  83 IISFTLAILAWAIvtMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 160 ILLIDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIF 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 240 MSMLFSLVFLGG-----------------------DFYSFLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLS 296
Cdd:MTH00029 243 MSCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322

                        330
                 ....*....|....
gi 887513774 297 LNFLLFFIGLKVMF 310
Cdd:MTH00029 323 LGLVILTAGILIGF 336
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-308 1.40e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 192.42  E-value: 1.40e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  11 NFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNLMISLF 90
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  91 IWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDSFDVFN 170
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 171 FMNLqiycWFIVFCFPlslaFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFSLVFLG 250
Cdd:MTH00090 161 SFSL----SLFVIYLP----FLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 887513774 251 gdfYSFLFFIkisFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLKV 308
Cdd:MTH00090 233 ---FSFLMLF---LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-304 6.47e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 157.39  E-value: 6.47e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   6 LMFILNFFLLIICVLIsVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFNL 85
Cdd:MTH00058   2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  86 MISLFIWSIFPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLIDS 165
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 166 FDVFNFMNLQIYCWFIVFCFplSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSMLFS 245
Cdd:MTH00058 161 YSLVDFYYSGWLSVLLFPLI--YILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGS 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 887513774 246 LVFLGGDFYSFLffikISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFI 304
Cdd:MTH00058 239 VLFFGGGFVSIM----LLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.33e-39

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 142.15  E-value: 1.33e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  15 LIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPVFnLMISLFIWSI 94
Cdd:NF040610  19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIV-AMGSVFLMLV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  95 -----------FPYMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILLI 163
Cdd:NF040610  98 aipfgaviingVEYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 164 DSFDVFNFMNLQIYCWFIvFCFPLS-LAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFMSM 242
Cdd:NF040610 178 GSLNIVEIVEAQSPIWFA-FLQPIGfIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSF 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 243 LFSLVFLGG----------DFYSFL-----FFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFIGLK 307
Cdd:NF040610 257 LVVLLFLGGwnlpgfvtdiPVLGIIlptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALG 336


                 ...
gi 887513774 308 VMF 310
Cdd:NF040610 337 LYL 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-311 3.85e-31

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 120.06  E-value: 3.85e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   3 YDLLMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPNKVGMLGIPQPFSDAIKLVCKEQPIPFMSNYFMYYFSPV 82
Cdd:CHL00032  24 YGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  83 FNLMISLFIWSIFP--YMTYMCSFPYGFLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:CHL00032 104 IAVISILLSYLVIPfgYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 161 LLIDSFDVFNFMNLQ----IYCWF-----IVFcfplsLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFL 231
Cdd:CHL00032 184 LLSNSLSTVDIVEAQskygFWGWNlwrqpIGF-----IVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYV 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 232 AEYASIIFMSMLFSLVFLGG-----DFYSFLFFIKISFVS------------------FLFIWV--RGTLPRFRYDKLMY 286
Cdd:CHL00032 259 ASYLNLLVSSLFVTVLYLGGwnlsiPYIFIPELFEINKTGgvfgttigifitlaktylFLFISIttRWTLPRLRMDQLLN 338

                        330       340
                 ....*....|....*....|....*
gi 887513774 287 LAWSSFLPLSLNFLLFFIGLKVMFL 311
Cdd:CHL00032 339 LGWKFLLPISLGNLLLTTSFQLLSL 363
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 2.13e-19

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 86.39  E-value: 2.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774   6 LMFILNFFLLIICVLISVAFLTLLERSVLGYIQIRKGPnkvgmlGIPQPFSDAIKLVCKEQPIPfMSNYFMYYFSPVFNL 85
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774  86 MISLFIWSIFPYMTYMCSFPYG--FLFFLCCTSVSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLILL- 162
Cdd:COG0650   74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLa 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 163 --IDSFDVFNFMNLQIYCWFIVFCFPLSLAFFASSLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYASIIFM 240
Cdd:COG0650  154 gsTSLSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513774 241 SMLFSLVFLGGDFYS------FLFFIKISFVSFLFIWVRGTLPRFRYDKLMYLAWSSFLPLSLNFLLFFI 304
Cdd:COG0650  234 LSLFVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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