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Conserved domains on  [gi|920774165|gb|ALA32612|]
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hypothetical protein F533_03620 [Mycoplasmoides pneumoniae 51494]

Protein Classification

Lipoprotein_3 domain-containing protein( domain architecture ID 10469634)

Lipoprotein_3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lipoprotein_3 pfam00938
Lipoprotein; This family of lipoproteins is Mycoplasma specific.
 24-107 1.41e-40

Lipoprotein; This family of lipoproteins is Mycoplasma specific.


:

Pssm-ID: 279306  Cd Length: 85  Bit Score: 135.32  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920774165   24 TSQVISSLSSAQKYFEANKG-ELNKNNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNKNK 102
Cdd:pfam00938   1 ATAVLSSLSSLQKYFDANTSlTLNKKNLITILKEAYENNPKGTVNVLLAGWKYTLLDQKILEKNQDPSRFVKAFGSGKSK 80


                  ....*
gi 920774165  103 DDVTP 107
Cdd:pfam00938  81 EDVEP 85
 
Name Accession Description Interval E-value
Lipoprotein_3 pfam00938
Lipoprotein; This family of lipoproteins is Mycoplasma specific.
 24-107 1.41e-40

Lipoprotein; This family of lipoproteins is Mycoplasma specific.


Pssm-ID: 279306  Cd Length: 85  Bit Score: 135.32  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920774165   24 TSQVISSLSSAQKYFEANKG-ELNKNNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNKNK 102
Cdd:pfam00938   1 ATAVLSSLSSLQKYFDANTSlTLNKKNLITILKEAYENNPKGTVNVLLAGWKYTLLDQKILEKNQDPSRFVKAFGSGKSK 80


                  ....*
gi 920774165  103 DDVTP 107
Cdd:pfam00938  81 EDVEP 85
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-49 5.17e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.55  E-value: 5.17e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 920774165   1 MKLKLYLIPLLASGIILSACSSTTSQVISslSSAQKYFEANKGELNKNN 49
Cdd:COG4105    1 MKKLLKLLLLLLLALLLAGCSSFKKALKS--WDAEELYEEAKEALEKGD 47
 
Name Accession Description Interval E-value
Lipoprotein_3 pfam00938
Lipoprotein; This family of lipoproteins is Mycoplasma specific.
 24-107 1.41e-40

Lipoprotein; This family of lipoproteins is Mycoplasma specific.


Pssm-ID: 279306  Cd Length: 85  Bit Score: 135.32  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920774165   24 TSQVISSLSSAQKYFEANKG-ELNKNNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNKNK 102
Cdd:pfam00938   1 ATAVLSSLSSLQKYFDANTSlTLNKKNLITILKEAYENNPKGTVNVLLAGWKYTLLDQKILEKNQDPSRFVKAFGSGKSK 80


                  ....*
gi 920774165  103 DDVTP 107
Cdd:pfam00938  81 EDVEP 85
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-49 5.17e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.55  E-value: 5.17e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 920774165   1 MKLKLYLIPLLASGIILSACSSTTSQVISslSSAQKYFEANKGELNKNN 49
Cdd:COG4105    1 MKKLLKLLLLLLLALLLAGCSSFKKALKS--WDAEELYEEAKEALEKGD 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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