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Conserved domains on  [gi|926733864|gb|ALD60372|]
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cytochrome b, partial (mitochondrion) [Reithrodontomys megalotis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 607.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 607.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-283 6.54e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 335.99  E-value: 6.54e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNE---------SFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  72 DVNYGWFIRYMHANGASMFFICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPSG----LNSDADKIPFHPYY 224
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 926733864 225 TIKDILGAILLLMVLMILVLFFPDilGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.18e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 1.18e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   9 PLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  89 MFFICLFLHVGRGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 926733864 167 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.45e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 269.25  E-value: 1.45e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   18 FIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   98 VGRGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 926733864  176 TRFFAFHFILPFIITALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 607.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00119
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 542.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00131
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 540.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00074
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 526.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00156
cytochrome b; Provisional
 11-283 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 522.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  11 LKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  91 FICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 171 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPDIL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 926733864 251 GDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00191
cytochrome b; Provisional
 4-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 522.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00145
cytochrome b; Provisional
 1-283 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 503.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  81 YMHANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 926733864 241 ILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00016
cytochrome b; Validated
 4-283 8.37e-172

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 479.56  E-value: 8.37e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 4-283 8.85e-171

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 477.28  E-value: 8.85e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00224
cytochrome b; Provisional
 4-283 2.14e-148

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 420.48  E-value: 2.14e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 4-283 1.10e-145

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 413.71  E-value: 1.10e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00053
cytochrome b; Provisional
 4-283 7.81e-144

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 409.10  E-value: 7.81e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   4 IRKKHPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  84 ANGASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 164 IWGGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 244 LFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-283 6.54e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 335.99  E-value: 6.54e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   1 MTNIRKKHPLLKIVNE---------SFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  72 DVNYGWFIRYMHANGASMFFICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPSG----LNSDADKIPFHPYY 224
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 926733864 225 TIKDILGAILLLMVLMILVLFFPDilGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00033
cytochrome b; Provisional
 6-283 2.72e-112

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 329.21  E-value: 2.72e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   6 KKHPLLKIVNEsFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHAN 85
Cdd:MTH00033   4 RKTGLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  86 GASMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165
Cdd:MTH00033  83 GASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 166 GGFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVL- 244
Cdd:MTH00033 163 GGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIe 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 926733864 245 -FFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00033 243 pRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00086
cytochrome b; Provisional
 12-283 9.98e-105

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 308.79  E-value: 9.98e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  12 KIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  92 ICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 172 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGaILLLMVLMILVLFFPDILG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270
                 ....*....|....*....|....*....|..
gi 926733864 252 DPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.18e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 1.18e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   9 PLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  89 MFFICLFLHVGRGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 926733864 167 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.45e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 269.25  E-value: 1.45e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   18 FIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   98 VGRGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 926733864  176 TRFFAFHFILPFIITALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 10-283 2.91e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 254.14  E-value: 2.91e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  10 LLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  90 FFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 170 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNP-SGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 926733864 249 ILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 6.03e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 149.70  E-value: 6.03e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864   88 SMFFICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  166 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 926733864  245 FFPDILGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 9.30e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 145.62  E-value: 9.30e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  33 FGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMFFICLFLHVGRGMYYGSYTFTE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 112 -TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 926733864 190 TALVIVHLLFLHETGSNNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-209 4.43e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.60  E-value: 4.43e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864  24 PSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWFIRYMHANGASMFFICLFLHVGRGMY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 926733864 104 YGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 926733864 182 H-FILPFIITALVIVHLLFLHETGSNNPS 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-283 4.08e-26

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 100.03  E-value: 4.08e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 926733864 207 NPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-283 5.06e-12

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 60.96  E-value: 5.06e-12
                          10        20
                  ....*....|....*....|....*.
gi 926733864  258 PANPLNTPAHIKPEWYFLFAYAILRS 283
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 258-282 3.17e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 37.29  E-value: 3.17e-03
                         10        20
                 ....*....|....*....|....*
gi 926733864 258 PANPLNTPAHIKPEWYFLFAYAILR 282
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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