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Conserved domains on  [gi|1018645444|gb|AMY62938|]
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NADH dehdyrogenase subunit 4, partial (mitochondrion) [Malayemys khoratensis]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-196 3.08e-110

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 322.53  E-value: 3.08e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00124  262 LTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00124  342 LLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPT 421

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELIQGT 196
Cdd:MTH00124  422 HITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-196 3.08e-110

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 322.53  E-value: 3.08e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00124  262 LTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00124  342 LLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPT 421

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELIQGT 196
Cdd:MTH00124  422 HITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-193 2.65e-34

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 126.35  E-value: 2.65e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLL 82
Cdd:COG1008   281 LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIA 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  83 ----LARNMqlllPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEI 158
Cdd:COG1008   361 dlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPL 436

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1018645444 159 PSYTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:COG1008   437 KEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-193 2.45e-30

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 115.42  E-value: 2.45e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:TIGR01972 273 AALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIP- 159
Cdd:TIGR01972 353 IAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSn 432

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1018645444 160 SYTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:TIGR01972 433 PEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPL 466
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-139 2.65e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 2.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLA-NTNYERTNSR 79
Cdd:pfam00361 151 LILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTR 230

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  80 TLLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGT 139
Cdd:pfam00361 231 NIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-196 3.08e-110

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 322.53  E-value: 3.08e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00124  262 LTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00124  342 LLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPT 421

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELIQGT 196
Cdd:MTH00124  422 HITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-195 4.05e-99

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 294.13  E-value: 4.05e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00068  262 IILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00068  342 LLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPN 421

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELIQG 195
Cdd:MTH00068  422 HLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-196 6.02e-90

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 271.00  E-value: 6.02e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00110  262 LMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00110  342 MILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTH 421

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELIQGT 196
Cdd:MTH00110  422 HINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 3-195 5.00e-81

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 247.95  E-value: 5.00e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLL 82
Cdd:MTH00127  265 LALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTML 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  83 LARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPSYT 162
Cdd:MTH00127  345 LARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHI 424

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 163 KALPPTHTREHLLMALHIIPMVLLMMKPELIQG 195
Cdd:MTH00127  425 IALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-193 9.13e-75

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 231.75  E-value: 9.13e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00206  258 IILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRT 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00206  338 ILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPN 417

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00206  418 HLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 5-193 8.29e-67

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 211.37  E-value: 8.29e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   5 LWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLLA 84
Cdd:MTH00044  268 CWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSIT 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  85 RNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPSYTKA 164
Cdd:MTH00044  348 RGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISN 427

                         170       180
                  ....*....|....*....|....*....
gi 1018645444 165 LPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00044  428 VSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-193 8.83e-61

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 195.37  E-value: 8.83e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00163  250 ISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRS 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00163  330 LLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYS 409

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00163  410 GLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-193 3.32e-56

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 182.73  E-value: 3.32e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00150  221 ISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRS 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00150  301 LFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSS 380

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00150  381 FLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-193 1.31e-51

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 171.85  E-value: 1.31e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00014  256 SSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRS 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00014  336 LFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPS 415

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00014  416 FMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-193 7.08e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 164.38  E-value: 7.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00205  254 FSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRS 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00205  334 MLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSS 413

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00205  414 QISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-193 2.65e-34

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 126.35  E-value: 2.65e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLL 82
Cdd:COG1008   281 LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIA 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  83 ----LARNMqlllPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEI 158
Cdd:COG1008   361 dlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPL 436

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1018645444 159 PSYTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:COG1008   437 KEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-193 2.45e-30

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 115.42  E-value: 2.45e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:TIGR01972 273 AALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIP- 159
Cdd:TIGR01972 353 IAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSn 432

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1018645444 160 SYTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:TIGR01972 433 PEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPL 466
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-139 2.65e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 2.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLA-NTNYERTNSR 79
Cdd:pfam00361 151 LILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTR 230

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  80 TLLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGT 139
Cdd:pfam00361 231 NIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-193 1.28e-28

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 110.92  E-value: 1.28e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00204  279 VMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:MTH00204  359 IKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSN 438

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 161 YTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00204  439 YLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-193 1.29e-26

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 105.28  E-value: 1.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK05846  281 ITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRD 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LL----LARNMQLLLPLMGlwwfLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWG 156
Cdd:PRK05846  361 IAdyggLAKVMPVLAAFFL----FFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFG 436

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1018645444 157 EIPSYTKALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:PRK05846  437 PVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPL 473
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-149 5.95e-26

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 103.59  E-value: 5.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00217  276 QTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRL 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYM 149
Cdd:MTH00217  356 IKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 3-193 1.76e-23

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 96.53  E-value: 1.76e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLL 82
Cdd:MTH00226  302 MGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIK 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  83 LARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPSYT 162
Cdd:MTH00226  382 YYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLI 461

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1018645444 163 KALPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:MTH00226  462 TFARDVNRREFYITASMVFFAFLIGIYPIFI 492
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-190 1.82e-18

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 82.44  E-value: 1.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVI--MTGLIC-LRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSR 79
Cdd:PRK06473  274 LATWAVVsvLYGASCaIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSR 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  80 TLLLAR---NMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWG 156
Cdd:PRK06473  354 DVDVLRgllNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFG 433

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1018645444 157 EIPSYTKALPPTHTREHLLMALHIIPMVLLMMKP 190
Cdd:PRK06473  434 RLTAELSNLPRVLWSERLPALVLAVLIVVLGIQP 467
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-151 2.47e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 78.80  E-value: 2.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00094  217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLT 151
Cdd:MTH00094  297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIV 367
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-150 5.48e-16

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 75.07  E-value: 5.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   8 VIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNsrTLLLAR-- 85
Cdd:PRK12561  262 IIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmg 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1018645444  86 NMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNwSD--------TTILMTGLGTLMTAIYTLYML 150
Cdd:PRK12561  340 GLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITS-SDvysstfrtITILLAAVGLILTPIYLLSML 411
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-154 1.01e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.41  E-value: 1.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   4 ALWGVIMTglicLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLL 83
Cdd:COG0651   283 MLVGALGA----LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDK 358

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1018645444  84 ARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGL-GTLMTAIYTLYMLTMTQ 154
Cdd:COG0651   359 LGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
ndhD CHL00011
NADH dehydrogenase subunit 4
 8-150 1.45e-15

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 73.83  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   8 VIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTnsRTLLLAR-- 85
Cdd:CHL00011  288 IIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmg 365

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1018645444  86 NMQLLLPLMGLWWFLASLNNMALPPTINLMGEL----AIIVSLFNWSDTTILMT---GLGTLMTAIYTLYML 150
Cdd:CHL00011  366 GIAIPMPKIFTMFSSFSMASLALPGMSGFVAELivffGIITSQKYLLMPKILITfvmAIGMILTPIYLLSML 437
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-193 8.80e-13

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 65.88  E-value: 8.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   8 VIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNM 87
Cdd:PRK02546  290 IIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGV 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  88 QLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSlFNWSDT--------TILMTGLGTLMTAIYTLYMLTMTQWG--- 156
Cdd:PRK02546  370 GQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVG-FATSDAytlpfrvvVVFLAAVGVILTPIYLLSMLREIFFGpen 448

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1018645444 157 -EIPSYTKaLPPTHTREHLLMALHIIPMVLLMMKPELI 193
Cdd:PRK02546  449 kELVSHEK-LVDAEPREVFIIACLLVPIIGIGLYPKLV 485
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-187 1.28e-11

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 62.25  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK06458  285 LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRD 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFN---WSDTTILMTGLGTLMTAIytLYMLTMTQWGE 157
Cdd:PRK06458  365 INVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAAL--VRRVAGMVFGE 442

                         170       180       190
                  ....*....|....*....|....*....|
gi 1018645444 158 ipsytkalPPTHTREHLLMALHIIPMVLLM 187
Cdd:PRK06458  443 --------PPEAVNRGDLGWLTTSPMFVHL 464
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-188 1.83e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.82  E-value: 1.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK08375  275 AVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LL----LARNMqlllPLMGLWWFLASLNNMALPPTINLMGELAIIVSLF---NWSDTTILMtgLGTLMTAIYTLYMLTMT 153
Cdd:PRK08375  355 LSelsgLGRRM----PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVLL--ASSLLALLYFLRIWYRA 428

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1018645444 154 QWGEIPSYTkalPPTHTREHLLMalhIIPMVLLMM 188
Cdd:PRK08375  429 FFGPPPPGS---EAPKQEAPLGM---LAPSLALAL 457
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-186 4.60e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.06  E-value: 4.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK12667  299 IILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRD 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWGEIPS 160
Cdd:PRK12667  379 IDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPK 458

                         170       180
                  ....*....|....*....|....*.
gi 1018645444 161 YTKAlppTHTREHLLMALHIIPMVLL 186
Cdd:PRK12667  459 SGEE---VEHKESPSMSVVILVLALA 481
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
3-167 6.09e-10

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 57.41  E-value: 6.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWG---VIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSR 79
Cdd:PRK07363  274 LAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTR 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  80 TL-LLARNMQLL--LPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLMTAIYTLYMLTMTQWG 156
Cdd:PRK07363  354 DLdVLNGLMNPIrgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFG 433

                         170
                  ....*....|.
gi 1018645444 157 EIPSYTKALPP 167
Cdd:PRK07363  434 RLDNKLAYYPK 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 9-187 3.18e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 55.54  E-value: 3.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   9 IMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRtewACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLllaRNMQ 88
Cdd:COG1009   287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDI---RKMG 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  89 LL---LPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTL---MTAIYTLYMLTMTQWGEipsyT 162
Cdd:COG1009   361 GLrkkMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVFFGK----P 436

                         170       180
                  ....*....|....*....|....*.
gi 1018645444 163 KALPPTHTRE-HLLMAlhiIPMVLLM 187
Cdd:COG1009   437 RPKTPKHPHEsPWLMT---LPLVVLA 459
PRK12650 PRK12650
DUF4040 family protein;
9-111 8.32e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.58  E-value: 8.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   9 IMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQ 88
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363

                          90       100
                  ....*....|....*....|...
gi 1018645444  89 LLLPLMGLWWFLASLNNMALPPT 111
Cdd:PRK12650  364 RRMPFTFVSVTIAALSMAAVPPL 386
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-126 1.33e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 50.54  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE 356

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFN 126
Cdd:PRK08377  357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-163 4.64e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 49.04  E-value: 4.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   4 ALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLL 83
Cdd:PRK06589  287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  84 ARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSD--TTILMTGLGTLMTAIYTLYMLTMTQWGEIPSY 161
Cdd:PRK06589  367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQpwLSIIVMLVVIASSILSALYLLKILSSIYKPSL 446


                  ..
gi 1018645444 162 TK 163
Cdd:PRK06589  447 SE 448
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 9-116 1.36e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.99  E-value: 1.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   9 IMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQ 88
Cdd:PRK12647  271 LTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLR 350

                          90       100
                  ....*....|....*....|....*...
gi 1018645444  89 LLLPLMGLWWFLASLNNMALPPTINLMG 116
Cdd:PRK12647  351 RAMPITAAAALLAALSMAGLPPLFGFLA 378
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-146 3.08e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.65  E-value: 3.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK12662  283 MILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTK 362

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFN---WsdTTILMTGLGTLMTAIYT 146
Cdd:PRK12662  363 LEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaW--IGLVVLLVGSGLSVIYV 429
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-125 1.50e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.72  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTglicLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLM-----------IAHGLTSSMLFCLA 69
Cdd:PRK08667  278 SISALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTA 353

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1018645444  70 NTNYERTNSRTLLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLF 125
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-186 4.56e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.01  E-value: 4.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK07691  279 LILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  81 LllaRNMQLLL---PLMGLWWFLASLNNMALPPTINLMGELAIIVSLFN----WSDTTILMTGLGTLMTAIytlYMLTMT 153
Cdd:PRK07691  359 L---KKMGGLIkryPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEagfyVSGIIVLLSSLLVLYSVI---KIFLKG 432

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1018645444 154 QWGEIPSYTKALPPTHTRehllMALHIIPMVLL 186
Cdd:PRK07691  433 FWGEPKGYDLNNKVPVKK----LLLPAVVLVAI 461
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 18-141 4.69e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 43.04  E-value: 4.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  18 QTDLKSLIAYSSVSHMG---LVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQLLLPLM 94
Cdd:PRK06525  293 QQDMKRLLAYSTITQLGymfFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLV 372

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1018645444  95 GLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGLGTLM 141
Cdd:PRK06525  373 GVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLL 419
PRK12646 PRK12646
DUF4040 family protein;
8-187 7.08e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 42.82  E-value: 7.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   8 VIMTGLICLRQTDLKSLIAYSSVSHMGLVIA--------ATLTRTEWACTGAIML------MIAHGLTSSMLFCLANTNY 73
Cdd:PRK12646  285 MLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyAQHQQDAIASIYVFVLfaalfhLMNHAIFKCALFMGVGIID 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  74 ERTNSRTLLLARNMQLLLPLMGLWWFLASLnNMALPPTIN--LMGEL-------AIIVSLFNWSdTTILMTGLG---TLM 141
Cdd:PRK12646  365 HEAGTRDIRILSGMRQLFPKMNLVMTIAAL-SMAGVPFLNgfLSKEMfldaltqTGQLSQFSLI-SMIIIVFIGviaSIF 442

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1018645444 142 TAIYTLYMLTMTQWGEIPsyTKALPPTHTREHLLMALHIIPMVLLM 187
Cdd:PRK12646  443 TFTYALYMVKEVFWGKYD--SKVFTKKNIHEPWLFSLPSLILMVLV 486
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 16-144 1.07e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.03  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  16 LRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLF-CLANTNYERTNSRTLL----LARNMQLL 90
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEdlagLARRSPLL 367

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1018645444  91 LPLMGLwwFLASLnnMALPPTINLMGELAIIVSLFNwSDTTILmTGLGTLMTAI 144
Cdd:COG1007   368 ALAMTI--FLLSL--AGIPPTAGFFGKFYVFSAAVE-AGLYWL-AVIAVLNSVI 415
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 8-66 1.85e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.52  E-value: 1.85e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645444   8 VIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLF 66
Cdd:PRK08668  283 IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
16-62 2.76e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.96  E-value: 2.76e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1018645444  16 LRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTS 62
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-76 5.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.94  E-value: 5.13e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1018645444   4 ALWGVImtglICLRQTDLKSLIAYSSVSHMGLVIAATLTrtewactgAIMLMIAHGLTSSMLFCLANTNYERT 76
Cdd:PRK07234  256 ALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRN 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-156 8.57e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 8.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   3 LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTLL 82
Cdd:PRK12644  273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIR 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  83 ----LARNMqlllPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDT----TILMTG--LGTLMTAIYTLYMLtm 152
Cdd:PRK12644  353 klsgLGRRQ----PVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALgpagPVVLAGivLGSILTVAYSLRFL-- 426


                  ....
gi 1018645444 153 tqWG 156
Cdd:PRK12644  427 --WG 428
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-66 2.30e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.20  E-value: 2.30e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1018645444   2 MLALWGVIMTGLIC---LRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLF 66
Cdd:PRK08676  275 VLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-121 4.63e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.26  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEWACTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:PRK12665  277 MVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSS 356

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1018645444  81 LLLARNMQLLLPLMGLWWFLASLNNMALPPTINLMGELAII 121
Cdd:PRK12665  357 LRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL 397
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-152 8.60e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 36.02  E-value: 8.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   1 MMLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLtrtewaCTGAIMLMIAHGLTSSMLFCLANTNYERTNSRT 80
Cdd:MTH00144  148 CVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAIL------HGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMK 221

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1018645444  81 LLLARNMqllLPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDT-TILMTGLGTLMTAIYTLYMLTM 152
Cdd:MTH00144  222 DLGSLKP---SYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLlLILLLLLGSLISLFFYLSVFFS 291
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-150 8.79e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 36.30  E-value: 8.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444   2 MLALWGVIMTGLICLRQTDLKSLIAYSSVSHMGLVIAATLTRTEwacTGAIMLMIAHGLTSSMLFCLANTNYERTNSRTL 81
Cdd:MTH00011  152 SMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPS---MAILYFMTYIIITTPLMLLFAYLNAFSTKFNSK 228

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645444  82 LLARNmqlllPLMGLWWFLASLNNMALPPTINLMGELAIIVSLFNWSDTTILMTGL-GTLMTAIYTLYML 150
Cdd:MTH00011  229 ISSMS-----QTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIvGSLMNLFYYLNLI 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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