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Conserved domains on  [gi|1020158237|gb|AMZ00025|]
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mTurquoise2 [Tn7 delivery vector pMRE107_PnptII_mTq2]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GFP super family cl08319
Green fluorescent protein;
19-202 3.85e-14

Green fluorescent protein;


The actual alignment was detected with superfamily member pfam01353:

Pssm-ID: 426217  Cd Length: 211  Bit Score: 68.75  E-value: 3.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSWGVqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKL-------EYNYFSDNVYITADkqkngikanFKIRH 170
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSLtgwdpsvEKMIPRNDKTLVGD---------INWSL 152
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1020158237 171 NIEDGG---VQLADHYQQNTPIGDGpVLLPDNHYL 202
Cdd:pfam01353 153 KLTDGKryrAQVVTNYTFAKPVPAG-LKLPPPHFV 186
 
Name Accession Description Interval E-value
GFP pfam01353
Green fluorescent protein;
19-202 3.85e-14

Green fluorescent protein;


Pssm-ID: 426217  Cd Length: 211  Bit Score: 68.75  E-value: 3.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSWGVqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKL-------EYNYFSDNVYITADkqkngikanFKIRH 170
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSLtgwdpsvEKMIPRNDKTLVGD---------INWSL 152
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1020158237 171 NIEDGG---VQLADHYQQNTPIGDGpVLLPDNHYL 202
Cdd:pfam01353 153 KLTDGKryrAQVVTNYTFAKPVPAG-LKLPPPHFV 186
 
Name Accession Description Interval E-value
GFP pfam01353
Green fluorescent protein;
19-202 3.85e-14

Green fluorescent protein;


Pssm-ID: 426217  Cd Length: 211  Bit Score: 68.75  E-value: 3.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  19 LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSWGVqcFARYPDHMkqhDFFKSAMPEG-YVQER 97
Cdd:pfam01353   7 MEGSVNGHEFDIVGGGNGNPNDGSLETKVKSTKGALPFSPYLLAPHL*YYQ--YLPFPDGT---SPFQAAVENGgYQVHR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020158237  98 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKL-------EYNYFSDNVYITADkqkngikanFKIRH 170
Cdd:pfam01353  82 TFKFEDGGVLTIVFTYTYEGGHIKGEFTFQGSGFPPDGPVMTKSLtgwdpsvEKMIPRNDKTLVGD---------INWSL 152
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1020158237 171 NIEDGG---VQLADHYQQNTPIGDGpVLLPDNHYL 202
Cdd:pfam01353 153 KLTDGKryrAQVVTNYTFAKPVPAG-LKLPPPHFV 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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