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Conserved domains on  [gi|1021312778|gb|ANA10345|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Caryanda sp. ZH-2016]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 7.03e-41

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.13  E-value: 7.03e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 7.03e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.13  E-value: 7.03e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.67e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 91.72  E-value: 1.67e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  19 MLMATMLSKKmINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIIIWMSSSMFFII 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1021312778  99 VLLGGLYHEWNQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 4.23e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   2 LTLFFSISISFIVPMIVMLMATMLSKKMiNNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIM 81
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVF 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1021312778  82 KTSNIIIWMsSSMFFIIVLLGGLYHEWNQGALKW 115
Cdd:COG0838    85 RELGWFGLI-EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 7.03e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.13  E-value: 7.03e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.69e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.74  E-value: 5.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   3 TLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1021312778  83 TSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.72e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 125.10  E-value: 1.72e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 3.63e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 109.18  E-value: 3.63e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-117 7.09e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 103.48  E-value: 7.09e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKminnrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00106    4 MLTLLTNTLLASLLVLIAFWLPQLNIYS-----EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00106   79 SQTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.31e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 100.06  E-value: 1.31e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDL-EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1021312778  81 MKTSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-116 9.12e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 98.03  E-value: 9.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   3 TLFFSISISFIVPMIVMLMATMLSKKMINNrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMK 82
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDN-EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1021312778  83 TSNIIIWMSSSMFFIIVLLGGLYHEWNQGALKWA 116
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 8-117 5.04e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 96.14  E-value: 5.04e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   8 ISISFIVPMIVMLMATMLSKkMINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNII 87
Cdd:MTH00136    8 LTITIALSLILAIVSFWLPQ-MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPL 86

                          90       100       110
                  ....*....|....*....|....*....|
gi 1021312778  88 IWMSSSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00136   87 LTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 3.12e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 93.91  E-value: 3.12e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  16 MIVMLMATMLSKKMI--------NN--REKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---VIIMK 82
Cdd:MTH00069    3 MLMLLISTILSLILItisfwlplNNpdSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1021312778  83 TSNIIIWmssSMFFIIVLLGGLYHEWNQGALKWAE 117
Cdd:MTH00069   83 PTNTLFW---STLILILLTLGLIYEWIQGGLEWAE 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.67e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 91.72  E-value: 1.67e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  19 MLMATMLSKKmINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIIIWMSSSMFFII 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1021312778  99 VLLGGLYHEWNQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 2.98e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 91.50  E-value: 2.98e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDG-EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1021312778  81 MKTSNIIIWMssSMFFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00203   80 NQLSSLSLLL--AFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 4.23e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   2 LTLFFSISISFIVPMIVMLMATMLSKKMiNNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIM 81
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVF 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1021312778  82 KTSNIIIWMsSSMFFIIVLLGGLYHEWNQGALKW 115
Cdd:COG0838    85 RELGWFGLI-EMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-116 1.12e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 77.60  E-value: 1.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  10 ISFIVPMIVMLMATMLSKKMiNNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP-IVIIMKTSNIII 88
Cdd:PRK06602   17 VAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGF 95

                          90       100
                  ....*....|....*....|....*...
gi 1021312778  89 WmsSSMFFIIVLLGGLYHEWNQGALKWA 116
Cdd:PRK06602   96 V--EAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-115 1.92e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 68.93  E-value: 1.92e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   2 LTLFFSISISFIVPMIVMLMATMLSKKmINNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIM 81
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLY 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1021312778  82 KTSNIIIWMSSSMFFIIVLLgGLYHEWNQGALKW 115
Cdd:MTH00018   80 NQIAPFGFWTMVGFLFILTL-GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 6.52e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 67.81  E-value: 6.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMINNrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDS-EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1021312778  81 MKTSNII-IWMssSMFFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00055   84 YNQIGLFgFWV--MYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 7.68e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 62.64  E-value: 7.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   3 TLFFSISISFIVPMIVMLMATMLSKKMIN----NREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIV 78
Cdd:MTH00030    7 TIFFSTLLGVGIILLLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1021312778  79 IIMKTSNII-IWMSSSmfFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00030   87 IVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIKGGLEW 122
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-115 1.34e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 46.58  E-value: 1.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   5 FFSISISFIVPMIVMLMATMLSKKMIN-NRE--KSSPFECGFDPKSSARMpFSLRFFLIAVIFLIFDVEIALILPIVIIM 81
Cdd:PRK08489   14 FVLLVLTFVAFFLTTRLARFISRKLAQkNTEklKLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMFPWAVDF 92

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1021312778  82 KTSNIIIWMSSSMFFIIVLLGGLYhEWNQGALKW 115
Cdd:PRK08489   93 KLLGLFGLIEMLLFIVLLTIGFIY-AWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.77e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 46.27  E-value: 1.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  32 NREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIIIwMSSSMFFIIVLLGGLYHEWNQG 111
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFA-LIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 1021312778 112 ALKW 115
Cdd:PRK07756  118 VLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 1.29e-06

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 43.89  E-value: 1.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778  32 NREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIIIWMSSSMFFIIVLLGGLYhEWN 109
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAY-VWR 112


                  ....*.
gi 1021312778 110 QGALKW 115
Cdd:PRK07928  113 RGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 7.74e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.42  E-value: 7.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISFIVPMIVMLMATMLSKKMiNNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1021312778  81 MKTSNIIIWMsssmfFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00092   80 DFSSLISFFM-----LMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-115 5.80e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.50  E-value: 5.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021312778   1 MLTLFFSISISF-IVPMIVMLMATMLSKKM-INNREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIV 78
Cdd:MTH00060    1 MLVLLFVFFVFFlLFLVIYFFHSGLWNNKIySGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1021312778  79 IimktsnIIIWMSS---SMFFIIVLLGGLYHEWNQGALKW 115
Cdd:MTH00060   81 F------QGLLFYNfwyYYFFLLLLFLGFVVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 38-115 7.58e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 34.02  E-value: 7.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1021312778  38 PFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIIIWMSSSMFFIIVLLgGLYHEWNQGALKW 115
Cdd:PRK06432   66 PYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLF-AVYYAFKMGYMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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