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Conserved domains on  [gi|1026750874|gb|AND74075|]
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coat protein [Lily symptomless virus]

Protein Classification

Flexi_CP_N and Flexi_CP domain-containing protein( domain architecture ID 10551227)

Flexi_CP_N and Flexi_CP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flexi_CP super family cl02836
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 105-244 1.55e-54

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


The actual alignment was detected with superfamily member pfam00286:

Pssm-ID: 425583  Cd Length: 138  Bit Score: 173.38  E-value: 1.55e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 105 SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSieFENGAVPVDSIAAIMKKHAGLRKVCR 184
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 185 LYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAAFDTFDYVTNQAAIQPVEGIIRRPTSAE 244
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 45-96 2.40e-23

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


:

Pssm-ID: 149427  Cd Length: 52  Bit Score: 89.97  E-value: 2.40e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1026750874  45 RLTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDEL 96
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 105-244 1.55e-54

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 173.38  E-value: 1.55e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 105 SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSieFENGAVPVDSIAAIMKKHAGLRKVCR 184
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 185 LYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAAFDTFDYVTNQAAIQPVEGIIRRPTSAE 244
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 45-96 2.40e-23

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 89.97  E-value: 2.40e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1026750874  45 RLTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDEL 96
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 105-244 1.55e-54

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 173.38  E-value: 1.55e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 105 SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSieFENGAVPVDSIAAIMKKHAGLRKVCR 184
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026750874 185 LYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAAFDTFDYVTNQAAIQPVEGIIRRPTSAE 244
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 45-96 2.40e-23

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 89.97  E-value: 2.40e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1026750874  45 RLTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDEL 96
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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