NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1064288672|gb|AOP02123|]
View 

NADH dehydrogenase subunit 4, partial (mitochondrion) [Astrochelys radiata]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-197 3.16e-118

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 342.95  E-value: 3.16e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00124  260 PFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00124  340 RTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTL 419

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWG 197
Cdd:MTH00124  420 PTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-197 3.16e-118

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 342.95  E-value: 3.16e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00124  260 PFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00124  340 RTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTL 419

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWG 197
Cdd:MTH00124  420 PTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-188 9.96e-34

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 125.19  E-value: 9.96e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:COG1008   278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTR 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETP 161
Cdd:COG1008   358 DIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLK 437

                         170       180
                  ....*....|....*....|....*..
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLL 188
Cdd:COG1008   438 EELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-141 2.23e-33

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 120.50  E-value: 2.23e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLA-NTNYERTN 79
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1064288672  80 SRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 141
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 3-200 8.26e-28

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 108.87  E-value: 8.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:TIGR01972 273 AALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGE-TP 161
Cdd:TIGR01972 353 IAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSN 432

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGVFY 200
Cdd:TIGR01972 433 PEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLTE 471
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-197 3.16e-118

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 342.95  E-value: 3.16e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00124  260 PFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00124  340 RTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTL 419

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWG 197
Cdd:MTH00124  420 PTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-199 1.27e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 316.09  E-value: 1.27e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00068  260 PFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00068  340 RTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPL 419

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGVF 199
Cdd:MTH00068  420 PNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-200 1.92e-97

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 290.26  E-value: 1.92e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00110  260 PFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00110  340 RTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRGKL 419

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGVFY 200
Cdd:MTH00110  420 THHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-197 4.02e-85

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 258.73  E-value: 4.02e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00127  261 PFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHS 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00127  341 RTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPL 420

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWG 197
Cdd:MTH00127  421 PDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-195 1.01e-75

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 234.45  E-value: 1.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00206  256 FFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHT 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00206  336 RTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKT 415

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00206  416 PNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-195 3.00e-64

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 204.82  E-value: 3.00e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00044  262 ILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGT 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00044  342 RTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSF 421

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00044  422 PSWISNVSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 2-195 3.76e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 188.82  E-value: 3.76e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:MTH00163  249 WISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSR 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETP 161
Cdd:MTH00163  329 SLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYY 408

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00163  409 SGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 2-199 6.89e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 171.95  E-value: 6.89e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:MTH00150  220 LISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETP 161
Cdd:MTH00150  300 SLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSS 379

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGVF 199
Cdd:MTH00150  380 SFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFMWI 417
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-195 3.85e-51

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 170.69  E-value: 3.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:MTH00014  254 PFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHT 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:MTH00014  334 RSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSP 413

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1064288672 161 PSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00014  414 PSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 2-195 7.15e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 159.37  E-value: 7.15e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:MTH00205  253 FFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSR 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETP 161
Cdd:MTH00205  333 SMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVS 412

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00205  413 SQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-188 9.96e-34

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 125.19  E-value: 9.96e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:COG1008   278 LAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTR 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETP 161
Cdd:COG1008   358 DIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLK 437

                         170       180
                  ....*....|....*....|....*..
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLL 188
Cdd:COG1008   438 EELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-141 2.23e-33

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 120.50  E-value: 2.23e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLA-NTNYERTN 79
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1064288672  80 SRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGT 141
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 3-200 8.26e-28

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 108.87  E-value: 8.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:TIGR01972 273 AALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGE-TP 161
Cdd:TIGR01972 353 IAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSN 432

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1064288672 162 SHMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGVFY 200
Cdd:TIGR01972 433 PEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLTE 471
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-195 2.02e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 102.06  E-value: 2.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVM-ALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTN 79
Cdd:MTH00204  276 PLIVMlSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHH 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  80 SRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGE 159
Cdd:MTH00204  356 TRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGG 435

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1064288672 160 TPSHMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:MTH00204  436 GSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 3-198 3.39e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 101.54  E-value: 3.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:MTH00226  300 IAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRL 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETPS 162
Cdd:MTH00226  380 IKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGN 459

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1064288672 163 HMKSIPPTHTREHLLMTLHILPMMLLMTKPELIWGV 198
Cdd:MTH00226  460 LITFARDVNRREFYITASMVFFAFLIGIYPIFILEV 495
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 3-151 5.61e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 100.90  E-value: 5.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:MTH00217  276 QTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRL 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHM 151
Cdd:MTH00217  356 IKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 3-195 7.53e-24

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 97.97  E-value: 7.53e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:PRK05846  281 ITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRD 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWGETPS 162
Cdd:PRK05846  361 IADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKN 440

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1064288672 163 HMKSIPPTHTREHLLMTLHILPMMLLMTKPELI 195
Cdd:PRK05846  441 EVAKLKDLNGRELLILLPLVALLLLLGVYPKPL 473
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 2-153 1.61e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 82.26  E-value: 1.61e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:MTH00094  216 WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSR 295

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLI 153
Cdd:MTH00094  296 LIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIV 367
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
5-169 1.83e-18

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 82.44  E-value: 1.83e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   5 MALWGVVMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:PRK06473  274 LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSR 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTR---NMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQWG 158
Cdd:PRK06473  354 DVDVLRgllNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFG 433

                         170
                  ....*....|.
gi 1064288672 159 ETPSHMKSIPP 169
Cdd:PRK06473  434 RLTAELSNLPR 444
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-143 6.59e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.80  E-value: 6.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:COG0651   275 LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTR 354

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN----WSNITILMTGLGTLI 143
Cdd:COG0651   355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEagawLLAAVLLLSSLLTLA 420
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 20-152 1.31e-15

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 74.30  E-value: 1.31e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  20 QTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLLTRNMQLSLPLMGLW 99
Cdd:PRK12561  272 QDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFAL 351

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672 100 WLLASLTNMALPPTINLMGELTI---IASLFNWSN----ITILMTGLGTLITATYTLHML 152
Cdd:PRK12561  352 FTASSMASLALPGMSGFVSELTVflgITSSDVYSStfrtITILLAAVGLILTPIYLLSML 411
ndhD CHL00011
NADH dehydrogenase subunit 4
 10-152 8.01e-13

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 66.12  E-value: 8.01e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  10 VVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTnsRVLLLTR-- 87
Cdd:CHL00011  288 IIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmg 365

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1064288672  88 NMQLSLPLMGLWWLLASLTNMALPPTINLMGELT----IIAS---LFNWSNITILMTGLGTLITATYTLHML 152
Cdd:CHL00011  366 GIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSqkyLLMPKILITFVMAIGMILTPIYLLSML 437
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 20-152 2.18e-11

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 62.03  E-value: 2.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  20 QTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLLTRNMQLSLPLMGLW 99
Cdd:PRK02546  300 QRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAM 379

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672 100 WLLASLTNMALPPTINLMGELTIIASL-------FNWSNITILMTGLGTLITATYTLHML 152
Cdd:PRK02546  380 WTACSLASLALPGMSGFVAELMVFVGFatsdaytLPFRVVVVFLAAVGVILTPIYLLSML 439
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-200 2.41e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 61.91  E-value: 2.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTR 377

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSN-ITILMTGLGTLITATYTLHMLITTQWGET 160
Cdd:PRK12667  378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFyLPALVLLIASAISLVGYFRAWYSLFFGKP 457

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1064288672 161 PSHMKSIppthTREHLLMTLHILPMMLLMtkpeLIWGVFY 200
Cdd:PRK12667  458 KSGEEVE----HKESPSMSVVILVLALAV----LILGILA 489
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-199 1.60e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 59.56  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:PRK06458  284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN---WSNITILMTGLGTLITA-TYTLHMLITTQw 157
Cdd:PRK06458  364 DINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAAlVRRVAGMVFGE- 442

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1064288672 158 getpshmksiPPTHTREHLLMTLHILPMMLLMTKPeLIWGVF 199
Cdd:PRK06458  443 ----------PPEAVNRGDLGWLTTSPMFVHLVLV-LVLGLY 473
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-188 2.41e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.74  E-value: 2.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   1 PFMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:PRK08375  273 LLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGT 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 RVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF---NWSNITILMtgLGTLITATYTLHMLITTQW 157
Cdd:PRK08375  353 RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVLL--ASSLLALLYFLRIWYRAFF 430

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1064288672 158 GETPSHMksiPPTHTREHLLMTLHILPMMLL 188
Cdd:PRK08375  431 GPPPPGS---EAPKQEAPLGMLAPSLALALL 458
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-189 5.71e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.85  E-value: 5.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  11 VMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQtqwSYTGSITLMIAHGLTSSMLFCLA-----NTNyertnsrvlll 85
Cdd:COG1009   287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAgsvihATG----------- 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  86 TRNM-QLS-----LPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL---ITATYTLHMLITTQ 156
Cdd:COG1009   353 TRDIrKMGglrkkMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVF 432

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1064288672 157 WGETPSHmksiPPTHTRE-HLLMTlhiLPMMLLM 189
Cdd:COG1009   433 FGKPRPK----TPKHPHEsPWLMT---LPLVVLA 459
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
4-169 1.51e-09

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 56.64  E-value: 1.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   4 VMALWG---VVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNS 80
Cdd:PRK07363  273 GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGT 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  81 R---VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYTLHMLITTQW 157
Cdd:PRK07363  353 RdldVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCF 432

                         170
                  ....*....|..
gi 1064288672 158 GETPSHMKSIPP 169
Cdd:PRK07363  433 GRLDNKLAYYPK 444
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 3-157 3.81e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 55.54  E-value: 3.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE 356

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLG-TLITATYTLHmLITTQW 157
Cdd:PRK08377  357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGaSVVEAVYYFR-LIHTMW 431
PRK12650 PRK12650
DUF4040 family protein;
11-168 2.47e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.12  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  11 VMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLLTRNMQ 90
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  91 LSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF-----NWSNITILMT-GLGTLITATYTLHMLITTqWGETPSHM 164
Cdd:PRK12650  364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVVLLLVGaALGAVFTFAYSARLVLGA-FVDGPRDM 442


                  ....
gi 1064288672 165 KSIP 168
Cdd:PRK12650  443 SHVK 446
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-138 1.40e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.89  E-value: 1.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   2 FMVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSR 81
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTT 361

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  82 VLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN---WSNITILMTG 138
Cdd:PRK12662  362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaWIGLVVLLVG 421
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-169 2.11e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.30  E-value: 2.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  18 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLLTRNMQLSLPLMG 97
Cdd:PRK12647  278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITA 357

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1064288672  98 LWWLLASLTNMALPPTINLMGELTIIASLFN---WSNITILMTGLGTLITATYTLHMLITTQWG---ETPSHMKSIPP 169
Cdd:PRK12647  358 AAALLAALSMAGLPPLFGFLAKELIYEALLEaplWSLILTVAAVLGNALMVAVAFLVGIKPFLGklvETPKHPHEAPV 435
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-142 6.03e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 45.74  E-value: 6.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMG---LVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTN 79
Cdd:PRK06525  276 AVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCG 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1064288672  80 SRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTL 142
Cdd:PRK06525  356 TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-144 1.65e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.56  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  14 SSICLRQTDLKSLIAYSSVSHMGLVIAATLtqtqwsyTGSItLMIAHGLTSSMLFCLANTNYERTnsrvllLTRNMQLSL 93
Cdd:PRK07234  260 VLFALLEKDLKRMLAFSTISQLGFILAAPL-------VGGL-YALAHGLVKSTLFLCAGALPSRN------FTELISQML 325

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1064288672  94 PlMGLWWLL--ASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLIT 144
Cdd:PRK07234  326 G-IGKWIPLtmASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVGTAAS 377
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-143 1.98e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.42  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   6 ALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLL 85
Cdd:PRK06589  287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1064288672  86 TRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN----WSNITILMTGLGTLI 143
Cdd:PRK06589  367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEqnqpWLSIIVMLVVIASSI 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-64 2.74e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 43.95  E-value: 2.74e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1064288672  18 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTS 64
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 3-127 3.44e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.57  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTssicLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLM-----------IAHGLTSSMLFCLA 71
Cdd:PRK08667  278 SISALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTA 353

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1064288672  72 NTNYERTNSRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLF 127
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
18-64 5.41e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 42.89  E-value: 5.41e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1064288672  18 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTS 64
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK12646 PRK12646
DUF4040 family protein;
14-189 6.98e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 42.82  E-value: 6.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  14 SSICLRQTDLKSLIAYSSVSHMGLV-----IAATLTQTQWSYTGSITLMIA---------HGLTSSMLFCLANTNYERTN 79
Cdd:PRK12646  289 SITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQQDAIASIYVFVLfaalfhlmnHAIFKCALFMGVGIIDHEAG 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  80 SRVLLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNI-------TILMTGLG---TLITATYTL 149
Cdd:PRK12646  369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLsqfslisMIIIVFIGviaSIFTFTYAL 448

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1064288672 150 HMLITTQWGetPSHMKSIPPTHTREHLLMTLHILPMMLLM 189
Cdd:PRK12646  449 YMVKEVFWG--KYDSKVFTKKNIHEPWLFSLPSLILMVLV 486
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-158 1.05e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.22  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWgvvmtssICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:PRK12644  278 MLLGGW-------RALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRD 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFN------WSNITILMTGLGTLITATYTLHMLittq 156
Cdd:PRK12644  351 IRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHdgalgpAGPVVLAGIVLGSILTVAYSLRFL---- 426


                  ..
gi 1064288672 157 WG 158
Cdd:PRK12644  427 WG 428
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
3-112 3.06e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.79  E-value: 3.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   3 MVMALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRV 82
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110
                  ....*....|....*....|....*....|
gi 1064288672  83 LLLTRNMQLSLPLMGLWWLLASLTNMALPP 112
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 19-199 2.26e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.05  E-value: 2.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  19 RQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLLLTRNMQLSLPLMGL 98
Cdd:PRK08668  292 LQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFA 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  99 WWLLASLTNMALPPTIN-----LMGELTIIASLFnwsnITILMTGLGTLITATYTLHMLITTQWGETPSHMKSIppthtR 173
Cdd:PRK08668  372 MYLVAIISLAGIPPMSGfaskwLIFEALISKGMP----ITAFMAFFGSIGSFLYVFRPLAGVFLGQLPSDHKDV-----K 442

                         170       180
                  ....*....|....*....|....*.
gi 1064288672 174 EHLLMTLhiLPMMLLMTkPELIWGVF 199
Cdd:PRK08668  443 EAPLPML--IPMAILVL-LNVVFGVA 465
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-153 8.34e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 36.30  E-value: 8.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672   5 MALWGVVMTSSICLRQTDLKSLIAYSSVSHMGLViaaTLTQTQWSYTGSITLMIAHGLTSSMLFCLANTNYERTNSRVLL 84
Cdd:MTH00011  153 MAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKI 229

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1064288672  85 LTRNMQLSLPLMGLWWLLAsltnmALPPTINLMGELTIIASLFNWSNITILMTGL-GTLITATYTLHMLI 153
Cdd:MTH00011  230 SSMSQTTSMSLFIMLLSLG-----GLPPFTGFMPKLMAIETLTSNSMILILLVLIvGSLMNLFYYLNLIF 294
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH