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Conserved domains on  [gi|1104688820|gb|APD76295|]
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ORF1 [Anguillid herpesvirus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11907 super family cl36084
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
874-954 2.45e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


The actual alignment was detected with superfamily member PRK11907:

Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 45.23  E-value: 2.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104688820 874 HTSPTAPTSPASPT-AATSPPATTSTAPAHTPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESVSTRPRRAVKR 952
Cdd:PRK11907   27 QAEEIVTTTPATSTeAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106


                  ..
gi 1104688820 953 PA 954
Cdd:PRK11907  107 KP 108
 
Name Accession Description Interval E-value
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
874-954 2.45e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 45.23  E-value: 2.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104688820 874 HTSPTAPTSPASPT-AATSPPATTSTAPAHTPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESVSTRPRRAVKR 952
Cdd:PRK11907   27 QAEEIVTTTPATSTeAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106


                  ..
gi 1104688820 953 PA 954
Cdd:PRK11907  107 KP 108
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 875-942 5.23e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 5.23e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1104688820 875 TSPTAPTSPASPTAATSPPATTSTAPAH---------TPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESV 942
Cdd:TIGR00601  84 VAPPAATPTSAPTPTPSPPASPASGMSAapasaveekSPSEESATATAPESPSTSVPSSGSDAASTLVVGSERETTI 160
 
Name Accession Description Interval E-value
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
874-954 2.45e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 45.23  E-value: 2.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104688820 874 HTSPTAPTSPASPT-AATSPPATTSTAPAHTPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESVSTRPRRAVKR 952
Cdd:PRK11907   27 QAEEIVTTTPATSTeAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106


                  ..
gi 1104688820 953 PA 954
Cdd:PRK11907  107 KP 108
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 875-942 5.23e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 5.23e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1104688820 875 TSPTAPTSPASPTAATSPPATTSTAPAH---------TPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESV 942
Cdd:TIGR00601  84 VAPPAATPTSAPTPTPSPPASPASGMSAapasaveekSPSEESATATAPESPSTSVPSSGSDAASTLVVGSERETTI 160
PRK10905 PRK10905
cell division protein DamX; Validated
 874-920 1.13e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 42.23  E-value: 1.13e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1104688820 874 HTSPTAPTSPASPTAATS---PPATTSTAPAHTPTPAPVSAATGDTEQSS 920
Cdd:PRK10905  185 RTEPAAPVASTKAPAATStpaPKETATTAPVQTASPAQTTATPAAGGKTA 234
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 876-916 1.33e-03

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 39.80  E-value: 1.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1104688820 876 SPTAPTSPASPTAATSPPATTSTAPAHTPTPAPVSAATGDT 916
Cdd:PRK06549   23 APAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADA 63
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 875-975 2.85e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 41.09  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104688820 875 TSPTAPTSPASPTAATSPPATTSTAPAHTPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESVSTRPRR------ 948
Cdd:PHA03291  207 TPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRyeltvt 286

                          90       100       110
                  ....*....|....*....|....*....|
gi 1104688820 949 ---AVKRPARFVSGVGLwGGCKYCYAEVCQ 975
Cdd:PHA03291  287 qiiQIAIPASIIACVFL-GSCACCLHRRCR 315
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
875-919 4.60e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 4.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1104688820 875 TSP-TAPTSPASPTAATSPPATTSTAPAHTPTPAPVSAATGDTEQS 919
Cdd:PRK13042   44 TPPsTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQS 89
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 874-954 9.47e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 9.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104688820 874 HTSPTAPTSPASPTAATSPPATTSTAPAHTPTPAPVSAATGDTEQSSAEGRGRVETAAVSTQAEGQESVSTRPRRAVKRP 953
Cdd:PRK14951  404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483


                  .
gi 1104688820 954 A 954
Cdd:PRK14951  484 A 484
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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