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Conserved domains on  [gi|1122811162|gb|APP93501|]
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M protein [Kibale red colobus virus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arteri_Gl super family cl03034
Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and ...
 20-155 7.27e-14

Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and N. Gl envelope protein, is encoded in ORF5, and is 30- 45 kDa in size. Gl is heterogenously glycosylated with N-acetyllactosamine in a cell-type-specific manner. The Gl glycoprotein expresses the neutralization determinants.


The actual alignment was detected with superfamily member pfam00951:

Pssm-ID: 109986  Cd Length: 179  Bit Score: 65.56  E-value: 7.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1122811162  20 PVCIALLRLFRPSIRGIVCLL-CIGCLAYAATAFNTHSLATIVTIAF----SIIYLAYVFIRwLVVRCRLCRVGPRYMFS 94
Cdd:pfam00951  43 PLFPYLTHLFSLGLLTTAHFLdFLNLSALSYTGYVHGRYVLSSAYAAcalaALVFGVYSFVI-RAVRLRNCMAGRYACTR 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1122811162  95 PSSFIESSLGRiaIPDSTTGLVSRRPGTTLANGKLVpDVKMMVLAGRVAAKKGLVHLRKYG 155
Cdd:pfam00951 122 HTNFVDDARGR--IHRSDSPVVVRKPGKTLVGGDLV-GIKTVVLGGRKAVKLTRVSAEKWE 179
 
Name Accession Description Interval E-value
Arteri_Gl pfam00951
Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and ...
 20-155 7.27e-14

Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and N. Gl envelope protein, is encoded in ORF5, and is 30- 45 kDa in size. Gl is heterogenously glycosylated with N-acetyllactosamine in a cell-type-specific manner. The Gl glycoprotein expresses the neutralization determinants.


Pssm-ID: 109986  Cd Length: 179  Bit Score: 65.56  E-value: 7.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1122811162  20 PVCIALLRLFRPSIRGIVCLL-CIGCLAYAATAFNTHSLATIVTIAF----SIIYLAYVFIRwLVVRCRLCRVGPRYMFS 94
Cdd:pfam00951  43 PLFPYLTHLFSLGLLTTAHFLdFLNLSALSYTGYVHGRYVLSSAYAAcalaALVFGVYSFVI-RAVRLRNCMAGRYACTR 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1122811162  95 PSSFIESSLGRiaIPDSTTGLVSRRPGTTLANGKLVpDVKMMVLAGRVAAKKGLVHLRKYG 155
Cdd:pfam00951 122 HTNFVDDARGR--IHRSDSPVVVRKPGKTLVGGDLV-GIKTVVLGGRKAVKLTRVSAEKWE 179
 
Name Accession Description Interval E-value
Arteri_Gl pfam00951
Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and ...
 20-155 7.27e-14

Arterivirus GL envelope glycoprotein; Arteriviruses encode 4 envelope proteins, Gl, Gs, M and N. Gl envelope protein, is encoded in ORF5, and is 30- 45 kDa in size. Gl is heterogenously glycosylated with N-acetyllactosamine in a cell-type-specific manner. The Gl glycoprotein expresses the neutralization determinants.


Pssm-ID: 109986  Cd Length: 179  Bit Score: 65.56  E-value: 7.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1122811162  20 PVCIALLRLFRPSIRGIVCLL-CIGCLAYAATAFNTHSLATIVTIAF----SIIYLAYVFIRwLVVRCRLCRVGPRYMFS 94
Cdd:pfam00951  43 PLFPYLTHLFSLGLLTTAHFLdFLNLSALSYTGYVHGRYVLSSAYAAcalaALVFGVYSFVI-RAVRLRNCMAGRYACTR 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1122811162  95 PSSFIESSLGRiaIPDSTTGLVSRRPGTTLANGKLVpDVKMMVLAGRVAAKKGLVHLRKYG 155
Cdd:pfam00951 122 HTNFVDDARGR--IHRSDSPVVVRKPGKTLVGGDLV-GIKTVVLGGRKAVKLTRVSAEKWE 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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