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Conserved domains on  [gi|1143272924|gb|AQM39859|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Tegra novaehollandiae viridinotata]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-168 5.17e-23

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 89.10  E-value: 5.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924   3 NLFIMFLFNYFKHPLSMTIIIICQTLIMVIFMSLTTKTFWMSYILFLVFLGGMLILFLYITSLAPNELFtphttlppiIF 82
Cdd:MTH00166    8 LLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKF---------KF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924  83 SSIIMMFMVTVSFMdqlswnIMSSNMDMNSIQESNIFISYMNQHLMLIKLYNTPTSMLTLTLVLYLLLTLIAIVKITNIF 162
Cdd:MTH00166   79 SLKLLILFLLMLLL------MLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*.
gi 1143272924 163 MGPLRS 168
Cdd:MTH00166  153 KGPLRS 158
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-168 5.17e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 89.10  E-value: 5.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924   3 NLFIMFLFNYFKHPLSMTIIIICQTLIMVIFMSLTTKTFWMSYILFLVFLGGMLILFLYITSLAPNELFtphttlppiIF 82
Cdd:MTH00166    8 LLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKF---------KF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924  83 SSIIMMFMVTVSFMdqlswnIMSSNMDMNSIQESNIFISYMNQHLMLIKLYNTPTSMLTLTLVLYLLLTLIAIVKITNIF 162
Cdd:MTH00166   79 SLKLLILFLLMLLL------MLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*.
gi 1143272924 163 MGPLRS 168
Cdd:MTH00166  153 KGPLRS 158
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-168 5.17e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 89.10  E-value: 5.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924   3 NLFIMFLFNYFKHPLSMTIIIICQTLIMVIFMSLTTKTFWMSYILFLVFLGGMLILFLYITSLAPNELFtphttlppiIF 82
Cdd:MTH00166    8 LLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKF---------KF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924  83 SSIIMMFMVTVSFMdqlswnIMSSNMDMNSIQESNIFISYMNQHLMLIKLYNTPTSMLTLTLVLYLLLTLIAIVKITNIF 162
Cdd:MTH00166   79 SLKLLILFLLMLLL------MLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*.
gi 1143272924 163 MGPLRS 168
Cdd:MTH00166  153 KGPLRS 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 4-114 6.33e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 49.50  E-value: 6.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924   4 LFIMFLFNYFKHPLSMTIIIICQTLIMVIFMSLTTkTFWMSYILFLVFLGGMLILFLYITSLAPNELFTPHTTLPPIIFS 83
Cdd:MTH00152   11 FSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKFVFFSLT 89

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1143272924  84 SIIMMFMVTVSFMDQLSWNIMSSNMDMNSIQ 114
Cdd:MTH00152   90 LFGFLGLFFFFLYLYSSGGLSLSSLFDGSSG 120
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 4-133 4.58e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 41.53  E-value: 4.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272924   4 LFIMFLFNYFKHPLSMTIIIICQTLIMVIFMSLTTkTFWMSYILFLVFLGGMLILFLYITSLAPNelftpHTTLPPIIFS 83
Cdd:MTH00212   11 LLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPN-----EHLFFKKYFK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1143272924  84 SIIMMFMVTVSFMDQLSWNIMSSNMDMNSIQESNIFISYMNQHLMLIKLY 133
Cdd:MTH00212   85 GFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNNNIPILLFL 134
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 44-66 9.02e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.12  E-value: 9.02e-03
                          10        20
                  ....*....|....*....|...
gi 1143272924  44 SYILFLVFLGGMLILFLYITSLA 66
Cdd:MTH00138   52 SLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 42-66 9.66e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 35.11  E-value: 9.66e-03
                          10        20
                  ....*....|....*....|....*
gi 1143272924  42 WMSYILFLVFLGGMLILFLYITSLA 66
Cdd:MTH00115   50 FVSLVLFLVYLGGMLVVFAYSVSLA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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