|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.54e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 416.55 E-value: 2.54e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1165910782 321 K*L*LLP**************MISVLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-296 |
3.93e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 79.00 E-value: 3.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 6 FTVLLSTVFLGtLMVMISS-HWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATAS--MLLMMAVI------ 75
Cdd:COG1007 104 FYALLLFATLG-MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSgfLLYGISLLygatgs 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 76 INLLYSGQWALTKMFNPTASII----ITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSIN- 150
Cdd:COG1007 183 LNLAGIAAALAAGGANSPLLLLglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFp 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 151 ------TNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSI----LNLLIYIVMTLTMFMLFI 220
Cdd:COG1007 263 glaadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAVIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 221 HT-SSTTTLSLSHAWN----KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMR 295
Cdd:COG1007 343 LLsRKGGEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
.
gi 1165910782 296 L 296
Cdd:COG1007 423 V 423
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
1.58e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 75.81 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 23 SSHWLMIWIGFEMNMLAIIP-ILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQWALTKMFNPT-------- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 94 ---ASIIITAALAMKLGLS****-******Q**TL*SGMLLLTWQKLAPI-----SVFYQLSTSINTNMLMTMAILSIM* 164
Cdd:pfam00361 81 lllLFLLILVGFLFKSAQVPFHTwLPDAYEGAPTPVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 165 G*WGGLNQTQLRKIMAYSSIAHMGWMMAIM----IYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHA-----WN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1165910782 236 KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
6-296 |
7.42e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 69.21 E-value: 7.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 6 FTVLLSTVFLGtLMVMISS-HWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQ 83
Cdd:TIGR01770 104 FYILLLFALLG-IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 84 WALTKMFNP------------TASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSI-- 149
Cdd:TIGR01770 183 LNFEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlf 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 150 -----NTNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMfMLFIHTSS 224
Cdd:TIGR01770 263 gfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGVL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 225 TTTLSLSHAWNKS-----------PLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFY 293
Cdd:TIGR01770 342 SLLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
...
gi 1165910782 294 MRL 296
Cdd:TIGR01770 422 LRV 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.54e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 416.55 E-value: 2.54e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1165910782 321 K*L*LLP**************MISVLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-326 |
2.20e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 320.21 E-value: 2.20e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSiNTNMLMTMAIL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
....*.
gi 1165910782 321 K*L*LL 326
Cdd:MTH00135 320 QLTLPL 325
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-321 |
7.45e-101 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 300.97 E-value: 7.45e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
.
gi 1165910782 321 K 321
Cdd:MTH00112 321 K 321
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-325 |
2.99e-97 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 291.82 E-value: 2.99e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
....*
gi 1165910782 321 K*L*L 325
Cdd:MTH00070 321 TNNLL 325
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-307 |
2.97e-76 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 238.29 E-value: 2.97e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPT 307
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-325 |
9.93e-69 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 218.68 E-value: 9.93e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 SGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAIL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
....*
gi 1165910782 321 K*L*L 325
Cdd:MTH00200 321 SNLLV 325
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-326 |
2.60e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 157.68 E-value: 2.60e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 1 MNPLIFTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLy 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 81 sgqwaLTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVfyqLSTSINTNMLMTMAIL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 161 SIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLV 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 241 TTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*T 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312
|
....*.
gi 1165910782 321 K*L*LL 326
Cdd:MTH00160 313 LILNFL 318
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
11-299 |
3.82e-37 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 136.06 E-value: 3.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 11 STVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIInllysgQWALTKMF 90
Cdd:MTH00011 13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 91 NPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNMLMTMAILSIM*G*WGGL 170
Cdd:MTH00011 87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 171 NQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLVTTLIMAVLLS 250
Cdd:MTH00011 167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1165910782 251 MGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYS 299
Cdd:MTH00011 247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
8-326 |
5.08e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 133.09 E-value: 5.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 8 VLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQWALt 87
Cdd:MTH00144 8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 88 kmfnptaSIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSINTNM-LMTMAILSIM*G* 166
Cdd:MTH00144 87 -------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYlLCVISVLSALVGS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 167 WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAwNKSPLVTTLIMA 246
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIIS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 247 VLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*TK*L*LL 326
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLL 318
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-325 |
1.87e-28 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 112.46 E-value: 1.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 8 VLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLysgqwalT 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFS-------N 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 88 KMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTsiNTNMLMTMAILSIM*G*W 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 168 GGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHAWNKSPLVTTLIMAV 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1165910782 248 LLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYSTSLTLFPTMNNMKMKWQFN*TK*L*L 325
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILL 310
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
5.34e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 80.84 E-value: 5.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 13 VFLGTLMVMISSHWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATASMLLMMAV-------------IINL 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 79 LYSGQWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFyqLSTSINTNMLMTMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 159 ILSIM*G*WGGLNQTQLRKIMAYSSIAHMG---WMMAI-MIYSPALSILNLLIYIVMTLTMFM--LFIHTSSTTTLSLSH 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIgSFESIQASLVYLFIYIIMSICVFSiiLALNVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1165910782 233 AWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-296 |
3.93e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 79.00 E-value: 3.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 6 FTVLLSTVFLGtLMVMISS-HWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATAS--MLLMMAVI------ 75
Cdd:COG1007 104 FYALLLFATLG-MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSgfLLYGISLLygatgs 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 76 INLLYSGQWALTKMFNPTASII----ITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSIN- 150
Cdd:COG1007 183 LNLAGIAAALAAGGANSPLLLLglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFp 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 151 ------TNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSI----LNLLIYIVMTLTMFMLFI 220
Cdd:COG1007 263 glaadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAVIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 221 HT-SSTTTLSLSHAWN----KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMR 295
Cdd:COG1007 343 LLsRKGGEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
.
gi 1165910782 296 L 296
Cdd:COG1007 423 V 423
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
1.58e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 75.81 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 23 SSHWLMIWIGFEMNMLAIIP-ILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQWALTKMFNPT-------- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 94 ---ASIIITAALAMKLGLS****-******Q**TL*SGMLLLTWQKLAPI-----SVFYQLSTSINTNMLMTMAILSIM* 164
Cdd:pfam00361 81 lllLFLLILVGFLFKSAQVPFHTwLPDAYEGAPTPVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 165 G*WGGLNQTQLRKIMAYSSIAHMGWMMAIM----IYSPALSILNLLIYIVMTLTMFMLFIHTSSTTTLSLSHA-----WN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1165910782 236 KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-267 |
1.93e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 70.82 E-value: 1.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 6 FTVLLSTVFLGTLMVMISSHWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIinLLYSG-- 82
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCA--LLYGLtg 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 83 ----QWALTKMFNPTASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSinTNMLMTMA 158
Cdd:MTH00199 177 etsiQGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPV--TNVVLICA 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 159 ILSIM*G*WGGLNQTQLRKIMAYSSIAHMG---WMMAIMIY-SPALSILNLLIYIVMTLTMF--MLFIHTSSTTTLSLSH 232
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFsiILSLKLTKGLIVEVSG 334
|
250 260 270
....*....|....*....|....*....|....*
gi 1165910782 233 AWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMII 267
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
6-296 |
7.42e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 69.21 E-value: 7.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 6 FTVLLSTVFLGtLMVMISS-HWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQ 83
Cdd:TIGR01770 104 FYILLLFALLG-IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 84 WALTKMFNP------------TASIIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQLSTSI-- 149
Cdd:TIGR01770 183 LNFEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlf 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 150 -----NTNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIVMTLTMfMLFIHTSS 224
Cdd:TIGR01770 263 gfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGVL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 225 TTTLSLSHAWNKS-----------PLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFY 293
Cdd:TIGR01770 342 SLLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
...
gi 1165910782 294 MRL 296
Cdd:TIGR01770 422 LRV 424
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
19-296 |
1.15e-12 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 68.69 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 19 MVMISS-HWLMIWIGFEMNMLAI-IPILMKKFNPRSMEASTKYFLTQATASMLLMMAVIINLLYSGQWALTKMFNPTAS- 95
Cdd:PRK05777 117 MVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADg 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 96 -----------IIITAALAMKLGLS**********Q**TL*SGMLLLTWQKLAPISVFYQL-------STSINTNMLMTM 157
Cdd:PRK05777 197 sgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggLSEDWQQVLAII 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 158 AILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSI----LNLLIYIVMTLTMFMLFIHTSSTTT-LSLSH 232
Cdd:PRK05777 277 AIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLGAFGVISLLRRKGGeAESIS 356
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1165910782 233 AWN----KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRL 296
Cdd:PRK05777 357 DFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
141-296 |
1.97e-10 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 61.70 E-value: 1.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 141 VFYQLSTSINTNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWM-MAIMIYSPAL---SILNLLIYIVMTLTMF 216
Cdd:COG0651 262 LFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTPLGlagALFHLLNHALAKALLF 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 217 M---LFIHTSSTTTLSLSHA-WNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYF 292
Cdd:COG0651 342 LaagAIERATGTRDLDKLGGlGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAY 421
|
....
gi 1165910782 293 YMRL 296
Cdd:COG0651 422 FVRI 425
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
157-295 |
3.05e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 51.98 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 157 MAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSP----ALSILNLLIYIVMTLTMFM---LF-IHTSSTTTL 228
Cdd:PRK02504 282 LAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAcviLFsLRTGTDQIS 361
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1165910782 229 SLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMR 295
Cdd:PRK02504 362 DYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
152-298 |
6.26e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.03 E-value: 6.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 152 NMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIYIV----MTLTMFM----LFIHTS 223
Cdd:PRK08375 272 WLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFLaagaIEVTYG 351
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1165910782 224 STTTLSLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTY 298
Cdd:PRK08375 352 TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-327 |
5.60e-06 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 43.02 E-value: 5.60e-06
10 20 30
....*....|....*....|....*....|....*..
gi 1165910782 291 YFYMRLTYSTSLTLFPTMNNMKMKWQFN*TK*L*LLP 327
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLP 37
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
153-296 |
6.31e-06 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 47.64 E-value: 6.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 153 MLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMA-IMIYSPAL---SILNLL-IYIVMTLTMFMLFIHTSS--- 224
Cdd:PRK12663 274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAGingAIFYLVhDMVVKTALFLIAGSLVRLtgy 353
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1165910782 225 TTTLSLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRL 296
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-267 |
1.49e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 46.78 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 9 LLSTVFLGTLMVMISSHWLMIWIGFEMNMLAIIPILMKKFNPRSM---------EASTKYFLTQATASMLLMMAVIINLL 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 80 YSG-QWALTKMFNPT-------------ASIIITAALAMKLGLS**********Q**TL*SGMLLLTwqklAPISVFYQL 145
Cdd:MTH00198 273 FTGnEGMLGTILSATlettnielrqgslGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAI----IPKFTVYIL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 146 STS--INTNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMM----AIMIYSPALSILNLLIYIVMTLTMFMLF 219
Cdd:MTH00198 349 LTSlvITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsAGTYESLQASWTYAVTYLVSALASFTVI 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1165910782 220 I---------------------HTSSTTTLSLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMII 267
Cdd:MTH00198 429 CtleefgtrtptsrqrdgsfgnYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
141-296 |
4.69e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 41.91 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 141 VFYQLSTSINtNMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSP-----ALSILNLLIYIVMTLTM 215
Cdd:CHL00049 271 PFYFSSNEWH-LLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDsndgyASMITYMLFYIFMNLGT 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 216 FMLFIHTSSTTTLSLSHAWN----KSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLY 291
Cdd:CHL00049 350 FACIVLFGLRTGTDNIRDYAglytKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIY 429
|
....*
gi 1165910782 292 FYMRL 296
Cdd:CHL00049 430 YYLKI 434
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
154-268 |
5.29e-04 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 41.85 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 154 LMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMMAIMIYSPALSILNLLIY------IVMTLTMF--MLFIHTSST 225
Cdd:TIGR01972 272 LAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQmishglITAALFLLvgVLYERAHTR 351
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1165910782 226 TTLSLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQ 268
Cdd:TIGR01972 352 DIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
154-299 |
5.58e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 41.50 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 154 LMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGW-MMAIMIYSPaLSILNLLIYIVM-TLTMFMLFI-------HTSS 224
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYiFMGIGIGTQ-LGLAAALFHIINhAIAKSLLFLasgvfihAAGT 376
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1165910782 225 TTTLSLSHAWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAITALLNLYFYMRLTYS 299
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
153-267 |
1.16e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 40.45 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 153 MLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWM-MAIMIYSPaLSILNLLIYIV----MTLTMFML--FIHtsst 225
Cdd:COG1008 277 LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNP-LGLQGAVLQMVshglITAALFLLvgVLY---- 351
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1165910782 226 ttlSLSH---------AWNKSPLVTTLIMAVLLSMGGLP*LSGFIPKWMII 267
Cdd:COG1008 352 ---DRTHtrdiadlggLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
152-299 |
7.58e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 37.87 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 152 NMLMTMAILSIM*G*WGGLNQTQLRKIMAYSSIAHMGWMM--AIMIYSPAL--SILNLLIYIVMTLTMFML---FIHTSS 224
Cdd:PRK06589 281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALgaAILHLVSHSFAKICLFYSmgsIYSLKK 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910782 225 TTTLSLSHAWNKS-PLVTTLIMAVLLSMGGLP*LSGFIPKWMIIQEMTK*ELIIM*TLMAI----TALLNLYFYMRLTYS 299
Cdd:PRK06589 361 EDQVDKLHGTSKSfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALYLLKILSS 440
|
|
| |
