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Conserved domains on  [gi|1165910794|gb|ARA69024|]
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cytochrome b, partial (mitochondrion) [Macrauchenia sp. MW-2017]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-108 3.63e-56

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 177.91  E-value: 3.63e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00100  271 EWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIII 350

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00100  351 GQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-108 3.63e-56

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 177.91  E-value: 3.63e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00100  271 EWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIII 350

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00100  351 GQLASILYFLIILILMPIASLIENNLLK 378
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-88 8.06e-30

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 102.56  E-value: 8.06e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:pfam00032  14 EWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLL 93


                  ....*...
gi 1165910794  81 GQLASILY 88
Cdd:pfam00032  94 GQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-84 2.34e-22

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 85.00  E-value: 2.34e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSmMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:cd00290    65 EWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLI 143


                  ....
gi 1165910794  81 GQLA 84
Cdd:cd00290   144 LQLF 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-98 1.27e-14

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 67.89  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIP--NKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVe***I 78
Cdd:COG1290   285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362

                          90       100
                  ....*....|....*....|
gi 1165910794  79 *IGQLASILYFSIILVL*PL 98
Cdd:COG1290   363 LLGSINTVTYFAFFLIVLPI 382
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-108 3.63e-56

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 177.91  E-value: 3.63e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00100  271 EWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIII 350

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00100  351 GQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00119
cytochrome b; Provisional
 1-108 1.24e-49

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 161.22  E-value: 1.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00119  272 EWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIII 351

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00119  352 GQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-104 9.17e-47

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 153.65  E-value: 9.17e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00131  271 EWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIII 350

                          90       100
                  ....*....|....*....|....
gi 1165910794  81 GQLASILYFSIILVL*PL**IAEN 104
Cdd:MTH00131  351 GQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00074
cytochrome b; Provisional
 1-108 3.21e-46

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 152.53  E-value: 3.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00074  272 EWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEI 351

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00074  352 GQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00034
cytochrome b; Validated
 1-106 1.07e-39

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 135.22  E-value: 1.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00034  271 EWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILL 350

                          90       100
                  ....*....|....*....|....*.
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL 106
Cdd:MTH00034  351 GQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00191
cytochrome b; Provisional
 1-98 1.73e-39

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 134.27  E-value: 1.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00191  268 EWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILL 347

                          90
                  ....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL 98
Cdd:MTH00191  348 GQISSFLYFFLFLLLFPL 365
CYTB MTH00053
cytochrome b; Provisional
 1-108 3.46e-36

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 126.36  E-value: 3.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00053  272 EWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILI 351

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL*K 108
Cdd:MTH00053  352 GQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-106 1.10e-34

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 122.12  E-value: 1.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00022  270 EWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILI 349

                          90       100
                  ....*....|....*....|....*.
gi 1165910794  81 GQLASILYFSIILVL*PL**IAENNL 106
Cdd:MTH00022  350 GQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00145
cytochrome b; Provisional
 1-95 1.44e-33

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 119.24  E-value: 1.44e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00145  272 EWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETI 351

                          90
                  ....*....|....*
gi 1165910794  81 GQLASILYFSIILVL 95
Cdd:MTH00145  352 GQVFTVLYFLFFLIL 366
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-88 8.06e-30

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 102.56  E-value: 8.06e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:pfam00032  14 EWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLL 93


                  ....*...
gi 1165910794  81 GQLASILY 88
Cdd:pfam00032  94 GQIATVYY 101
CYTB MTH00156
cytochrome b; Provisional
 1-95 1.45e-29

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 108.33  E-value: 1.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00156  261 EWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILT 340

                          90
                  ....*....|....*
gi 1165910794  81 GQLASILYFSIILVL 95
Cdd:MTH00156  341 GQILTILYFLYFIIN 355
CYTB MTH00016
cytochrome b; Validated
 1-108 9.51e-29

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 106.30  E-value: 9.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00016  272 EWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFL 351

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSiILVL*PL**IAENNL*K 108
Cdd:MTH00016  352 GQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00224
cytochrome b; Provisional
 1-108 1.05e-25

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 98.45  E-value: 1.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00224  272 EWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGI 351

                          90       100
                  ....*....|....*....|....*...
gi 1165910794  81 GQLASILYFSiILVL*PL**IAENNL*K 108
Cdd:MTH00224  352 GQVFTILYFS-YFIISPAISKLWDDLLN 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-84 2.34e-22

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 85.00  E-value: 2.34e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSmMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:cd00290    65 EWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLI 143


                  ....
gi 1165910794  81 GQLA 84
Cdd:cd00290   144 LQLF 147
CYTB MTH00033
cytochrome b; Provisional
 1-104 1.90e-21

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 86.92  E-value: 1.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPV-E***I* 79
Cdd:MTH00033  270 EWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVL 349

                          90       100
                  ....*....|....*....|....*
gi 1165910794  80 IGQLASILYFSIILVL*PL**IAEN 104
Cdd:MTH00033  350 IGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-98 1.27e-14

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 67.89  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIP--NKLGGVLALLLSILVLVIIPMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVe***I 78
Cdd:COG1290   285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362

                          90       100
                  ....*....|....*....|
gi 1165910794  79 *IGQLASILYFSIILVL*PL 98
Cdd:COG1290   363 LLGSINTVTYFAFFLIVLPI 382
CYTB MTH00086
cytochrome b; Provisional
 1-95 3.52e-13

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 63.81  E-value: 3.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVLVIIPMLHTSkqrSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00086  259 EWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFL 335

                          90
                  ....*....|....*
gi 1165910794  81 GQLASILYFSIILVL 95
Cdd:MTH00086  336 SQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 1-94 3.94e-07

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 46.51  E-value: 3.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1165910794   1 EWYFLFAYAILRSIPNKLGGVLALLLSILVlviipMLHTSKQRSMMFRPLSQCLFWILVADLLTLTWIGGQPVE***I*I 80
Cdd:MTH00046  263 EWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLI 337

                          90
                  ....*....|....
gi 1165910794  81 GQLASILYFSIILV 94
Cdd:MTH00046  338 SQLFSVLMVLLLFI 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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