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Conserved domains on  [gi|1185245784|gb|ARK08601|]
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eukaryotic elongation factor 2, partial [Nyctyornis amictus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13351 super family cl46912
elongation factor G-like protein;
9-75 2.93e-24

elongation factor G-like protein;


The actual alignment was detected with superfamily member PTZ00416:

Pssm-ID: 481252 [Multi-domain]  Cd Length: 836  Bit Score: 93.96  E-value: 2.93e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1185245784   9 KVEDMMKKLWGDRYFDPATGKFSKSATSPDGKKLPRTFCQLILDPIFKV*DAIMNFKKEEAAKLIEK 75
Cdd:PTZ00416  230 EESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKS 296
 
Name Accession Description Interval E-value
PTZ00416 PTZ00416
elongation factor 2; Provisional
 9-75 2.93e-24

elongation factor 2; Provisional


Pssm-ID: 240409 [Multi-domain]  Cd Length: 836  Bit Score: 93.96  E-value: 2.93e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1185245784   9 KVEDMMKKLWGDRYFDPATGKFSKSATSPDGKKLPRTFCQLILDPIFKV*DAIMNFKKEEAAKLIEK 75
Cdd:PTZ00416  230 EESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKS 296
 
Name Accession Description Interval E-value
PTZ00416 PTZ00416
elongation factor 2; Provisional
 9-75 2.93e-24

elongation factor 2; Provisional


Pssm-ID: 240409 [Multi-domain]  Cd Length: 836  Bit Score: 93.96  E-value: 2.93e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1185245784   9 KVEDMMKKLWGDRYFDPATGKFSKSATSPDGKKLPRTFCQLILDPIFKV*DAIMNFKKEEAAKLIEK 75
Cdd:PTZ00416  230 EESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKS 296
PLN00116 PLN00116
translation elongation factor EF-2 subunit; Provisional
 11-75 1.61e-16

translation elongation factor EF-2 subunit; Provisional


Pssm-ID: 177730 [Multi-domain]  Cd Length: 843  Bit Score: 71.68  E-value: 1.61e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1185245784  11 EDMMKKLWGDRYFDPATGKFSKSATspDGKKLPRTFCQLILDPIFKV*DAIMNFKKEEAAKLIEK 75
Cdd:PLN00116  238 SKMMERLWGENFFDPATKKWTTKNT--GSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEK 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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