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Conserved domains on  [gi|1198285465|gb|ART89308|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Trimerotropis sp. SA3]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-277 2.14e-104

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.77  E-value: 2.14e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1198285465 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYIS 277
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-277 2.14e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.77  E-value: 2.14e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1198285465 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYIS 277
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.69e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.85  E-value: 6.69e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 159 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTLF 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1198285465 230 VVIVGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-241 3.97e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.27  E-value: 3.97e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPM-LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:TIGR01974 265 RTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:TIGR01974 345 GAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAF 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLTL 228
Cdd:TIGR01974 425 YSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPT 504

                         250
                  ....*....|...
gi 1198285465 229 FVVIVGSYLGYLI 241
Cdd:TIGR01974 505 AVAILGILLAYLL 517
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-153 1.17e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 1.17e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGW--FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKA 75
Cdd:pfam00361 134 RRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSA 213

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285465  76 LLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 153
Cdd:pfam00361 214 GLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-277 2.14e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.77  E-value: 2.14e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1198285465 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYIS 277
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGIS 508
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-273 3.73e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 223.37  E-value: 3.73e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1198285465 240 LISDfdyfYGLFSLNFLSFVSFVGSMWFMPFLST 273
Cdd:MTH00209  467 MVLK----KNFFLIKGYKVNYFLSQMWFLPDLSS 496
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-274 2.63e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 221.26  E-value: 2.63e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF 467

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1198285465 240 LISDFDYFYGLFSLNflsfVSFVGSMWFMPFLSTN 274
Cdd:MTH00151  468 GFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQ 498
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-277 2.41e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 211.16  E-value: 2.41e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLsSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1198285465 240 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYIS 277
Cdd:MTH00207  471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIM 508
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-261 5.54e-51

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 175.91  E-value: 5.54e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNY-GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTLFVVIVGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLG 495

                         250       260
                  ....*....|....*....|....
gi 1198285465 239 -YLISDFDYFYGLFSLNFLSFVSF 261
Cdd:MTH00211  496 lELVNLTHKQLKTSTLSFSNMLGY 519
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-177 2.27e-49

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 171.89  E-value: 2.27e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFL-LLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00004  261 RTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFL 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00004  341 CSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAA 420

                         170
                  ....*....|....*...
gi 1198285465 160 YSFRLFYYSMMGDNNFYP 177
Cdd:MTH00004  421 YSLRMILLVQTGFPRTPP 438
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 10-261 1.60e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 164.37  E-value: 1.60e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  10 NYGWFL---LLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:MTH00208  295 NSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIH 374

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  87 NLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:MTH00208  375 SLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIF 454

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 167 YSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyMIVLPWYLSFLTLFVVIVGSYLGYLISDFdY 246
Cdd:MTH00208  455 FCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSFLLS-L 532

                         250
                  ....*....|....*
gi 1198285465 247 FYGLFSLNFLSFVSF 261
Cdd:MTH00208  533 SSNPINSNFFSFLSN 547
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-234 4.09e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 163.10  E-value: 4.09e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLL-VGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00108  262 RFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00108  342 CSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAA 421

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFP--VPYMiVLPWYLSFLTLFVVIVG 234
Cdd:MTH00108  422 YSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.69e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.85  E-value: 6.69e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 159 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTLF 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1198285465 230 VVIVGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-242 6.57e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 154.30  E-value: 6.57e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  16 LLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIR 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  96 FMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285465 176 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTLFVVIVGSYLGYLIS 242
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTLLGLLIALDLA 502
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-177 2.91e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 152.68  E-value: 2.91e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  35 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVS 114
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1198285465 115 SLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 177
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-241 3.97e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.27  E-value: 3.97e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPM-LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:TIGR01974 265 RTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:TIGR01974 345 GAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAF 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLTL 228
Cdd:TIGR01974 425 YSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPT 504

                         250
                  ....*....|...
gi 1198285465 229 FVVIVGSYLGYLI 241
Cdd:TIGR01974 505 AVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-241 1.25e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 139.91  E-value: 1.25e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  14 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQD 93
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  94 IRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG-- 171
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGke 441

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 172 -DNNFYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFP-----VPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:PRK06590  442 kEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWL 517


                  .
gi 1198285465 241 I 241
Cdd:PRK06590  518 L 518
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 17-256 2.68e-37

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 139.06  E-value: 2.68e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  17 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRF 96
Cdd:MTH00020  279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  97 MGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 176
Cdd:MTH00020  359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 177 PSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLIF--------PVPYMI-VLPWYLSFLTLFVVIV-GSYLGYLISDF 244
Cdd:MTH00020  439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSLGGIGLVIIlYFYSSKTFRVP 518

                         250
                  ....*....|..
gi 1198285465 245 DYFYGLFSLNFL 256
Cdd:MTH00020  519 FSFIGRNSYTFL 530
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-276 3.18e-37

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 138.60  E-value: 3.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   2 FSPMLLTynygwFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCA 81
Cdd:MTH00210  270 GSPLALT-----IVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSA 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  82 GSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYS 161
Cdd:MTH00210  345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 162 FRLFYYSMMGDNNFYPSYFF--DDKSYFISFGMIGLLFVAVFGGS-----FLSWLIFPvpymiVLPWYLSFLTLFVVIVG 234
Cdd:MTH00210  425 IRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPP-----IVPNSIKMIPLLFSLLG 499

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1198285465 235 SYLGYLISDFDYFY------GLFSLNFLSFVSFVGSMWFMPFLSTNYI 276
Cdd:MTH00210  500 ALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFI 547
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
14-172 3.64e-31

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 122.05  E-value: 3.64e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  14 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSD--- 90
Cdd:PRK07376  293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  91 -----SQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK07376  373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                  ....*..
gi 1198285465 166 YYSMMGD 172
Cdd:PRK07376  451 FLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 17-190 3.94e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 107.29  E-value: 3.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  17 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNL-------- 88
Cdd:CHL00025  296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  89 SDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVvclSWVNFLIF-FLYFISTGLTASYSFRLFYY 167
Cdd:CHL00025  376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                         170       180
                  ....*....|....*....|....*.
gi 1198285465 168 SMMGD---NNFYPSYFFDDKSYFISF 190
Cdd:CHL00025  453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-153 1.17e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 1.17e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGW--FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKA 75
Cdd:pfam00361 134 RRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSA 213

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285465  76 LLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 153
Cdd:pfam00361 214 GLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-277 4.85e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 93.00  E-value: 4.85e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1198285465 240 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYIS 277
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIP 117
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 5.37e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.44  E-value: 5.37e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  11 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  88 LsDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYY 167
Cdd:COG0651   351 T-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-136 5.64e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 95.41  E-value: 5.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  17 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM-GYYGLAFFHLLTHALFKALLFMCAGSMIHNLS-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1198285465  95 RFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEV 136
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-261 1.60e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 90.75  E-value: 1.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIgllfvaVFGGSFLSWLIFpvpYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00095  376 SYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNF---NLLNLPSLFLYLDFYVPLFYLFMIML 446

                         250       260
                  ....*....|....*....|.
gi 1198285465 241 ISDFDYFYGLFSLNFLSFVSF 261
Cdd:MTH00095  447 FSFFFFKLLFKELKYKFFVDY 467
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-171 1.97e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.55  E-value: 1.97e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  10 NYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLG---LMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  87 NlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWVNFLIFFLyfISTGLTASYSFRLF 165
Cdd:PRK08375  349 T-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ....*.
gi 1198285465 166 YYSMMG 171
Cdd:PRK08375  426 YRAFFG 431
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 13-171 1.12e-17

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 82.67  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG------------YYGLAF----FHLLTHALFKAL 76
Cdd:PRK12645  275 WTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGS 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVC---------LSWVNFLIF 147
Cdd:PRK12645  355 LFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateanlfsLDTWGVLFP 433

                         170       180
                  ....*....|....*....|....
gi 1198285465 148 FLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK12645  434 VIAWVASVFTFVYSIIFIFKTFFG 457
PRK12650 PRK12650
DUF4040 family protein;
1-135 1.17e-17

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 82.78  E-value: 1.17e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML---LTYNygWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFK 74
Cdd:PRK12650  260 RFSPVFhdvAVWN--WLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFK 337

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285465  75 ALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12650  338 SSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12646 PRK12646
DUF4040 family protein;
1-135 1.35e-17

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 82.50  E-value: 1.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-------------YYGL---- 62
Cdd:PRK12646  262 RFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1198285465  63 AFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-163 1.23e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 79.46  E-value: 1.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLL--LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12648  270 WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSpLAAvaAIFHIINHATFKASLFMAAGIIDHE 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  88 lSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWVNFLIFFLYFISTGLTASYSFR 163
Cdd:PRK12648  350 -TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-166 8.33e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 77.27  E-value: 8.33e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-----YYGLAFfhLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12644  268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  88 lSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV----CLSWVNFLIFFLYFISTGLTASYSFR 163
Cdd:PRK12644  346 -TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLR 424


                  ...
gi 1198285465 164 LFY 166
Cdd:PRK12644  425 FLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-137 3.48e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 75.34  E-value: 3.48e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKAL 76
Cdd:PRK12647  247 RLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGA 326

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285465  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV 137
Cdd:PRK12647  327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-166 3.72e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.01  E-value: 3.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  15 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlSDS 91
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqLGLaaALFHIINHAIAKSLLFLASGVFIHA-AGT 376

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1198285465  92 QDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLY-FISTGLTASYSFRLFY 166
Cdd:PRK12667  377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-135 1.16e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 73.71  E-value: 1.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLLL--VGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYY-------GLAFFHLLTHALFKALLFMCAGS 83
Cdd:PRK12649  277 WFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAGI 356

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1198285465  84 MIHNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  357 VAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-171 1.62e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 73.21  E-value: 1.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   2 FSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---------------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  67 LLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLswVNFLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180
                  ....*....|....*....|....*
gi 1198285465 147 FFLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFG 458
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 14-129 5.02e-13

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 68.78  E-value: 5.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  14 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNlSDSQD 93
Cdd:PRK07390  286 VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQD 364

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1198285465  94 IRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYS 129
Cdd:PRK07390  365 LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-164 9.63e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 67.87  E-value: 9.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLS 89
Cdd:PRK08377  274 KLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLG 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1198285465  90 DSQDIRFMGSIVNfMPLTS**FNVSSLSLCGMPFLAGFYSKDLILeVVCLSWVNFLIFFLYFISTGLTASYSFRL 164
Cdd:PRK08377  354 GTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 5.86e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.52  E-value: 5.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  11 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM----GYYGL----------AFFHLLTHALFKAL 76
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSL 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1198285465  77 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-200 3.53e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 62.91  E-value: 3.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  12 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM---SILSMGYYGLAFFHLLTHALFKALLFMCAGSmIHNL 88
Cdd:PRK06589  280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  89 SDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WVNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK06589  359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1198285465 166 YysmmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 200
Cdd:PRK06589  439 S------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 11-127 3.67e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.92  E-value: 3.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  11 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKAL 76
Cdd:PRK08042  244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1198285465  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 12-166 6.30e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.32  E-value: 6.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  12 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGLA--FFHLLTHALFKALLFMCAGSMIHNL 88
Cdd:PRK08668  272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYRT 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285465  89 SDSQdIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:PRK08668  352 GTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 7.22e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.21  E-value: 7.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  12 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKALL 77
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLL 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1198285465  78 FMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLS 140
Cdd:PRK06521  356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-243 1.53e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 61.05  E-value: 1.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00063  289 VGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLY 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465 161 SFRLFYYSMMGDNNFYPSYFFDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00063  369 SFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGV 438


                  ....
gi 1198285465 240 LISD 243
Cdd:MTH00063  439 LFYD 442
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 1.84e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 60.74  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   6 LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGyyglAFFHLlTHALFKALLFMCAGSmI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1198285465  86 HNLSDSQDIRFMGSIVNFMPLTs**fnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-171 4.60e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 59.71  E-value: 4.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  11 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGsMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVG-VLYD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  88 LSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYY 167
Cdd:COG1008   353 RTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYLLWMYQR 430


                  ....
gi 1198285465 168 SMMG 171
Cdd:COG1008   431 VFFG 434
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-177 4.90e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.58  E-value: 4.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  14 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHnLSD 90
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  91 SQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMM 170
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW 434


                  ....*..
gi 1198285465 171 GDNNFYP 177
Cdd:PRK07691  435 GEPKGYD 441
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 12-134 1.09e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 58.45  E-value: 1.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  12 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL------AFFHLLTHALFKALLFMCAGSMI 85
Cdd:PRK06525  272 GYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALS 351

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1198285465  86 HNLSdSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  352 YSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
24-134 6.83e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 56.06  E-value: 6.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  24 FMAGLGANF---EFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLSDSqDIRFM 97
Cdd:PRK12668  249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTaLAIngAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTEL 327

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1198285465  98 GSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  328 GGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-83 1.01e-08

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 55.47  E-value: 1.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPMLLTYNYG-WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                  ....
gi 1198285465  80 CAGS 83
Cdd:PRK08168  331 SASE 334
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 35-172 1.20e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.13  E-value: 1.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  35 DLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS**F 111
Cdd:PRK05846  300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285465 112 NVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGD 172
Cdd:PRK05846  379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-137 2.22e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.58  E-value: 2.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   5 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCA 81
Cdd:PRK12662  272 VFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVS 351

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1198285465  82 GSMIHNLsDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV 137
Cdd:PRK12662  352 GSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-174 1.37e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 1.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  15 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHnLSDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  92 QDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLITSLITMYSLFRIFFLAYWG 432


                  ...
gi 1198285465 172 DNN 174
Cdd:PRK12663  433 DKD 435
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 1.47e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.11  E-value: 1.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  14 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGsMIHNLSD 90
Cdd:PRK12665  275 LLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAG 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1198285465  91 SQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  354 SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 2.37e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.41  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   1 RFSPmLLTYNYGWFLLLVGCMTMFMAGLGANF-EFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSP-LFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ....
gi 1198285465  80 CAGS 83
Cdd:PRK08601  334 QSGS 337
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 35-134 2.65e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.84  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  35 DLKSIIALSTLSQLGLMMSILSMGYyGLAFF----HLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS** 110
Cdd:PRK06458  304 DIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                          90       100
                  ....*....|....*....|....
gi 1198285465 111 FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  382 LMLGALAIAGMPPFGVFISEFLIL 405
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 5-211 4.43e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 40.96  E-value: 4.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   5 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSM 84
Cdd:MTH00160  136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  85 IHNLSDSQDIRFMGSIVNFMPLTS**fnvssLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLyFISTGLTASYSFRL 164
Cdd:MTH00160  216 IFFLNQLFNSNNKSKKIKFLLFLNL------LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1198285465 165 FYYSMMGdNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 211
Cdd:MTH00160  289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 15-165 1.09e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  15 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS 91
Cdd:PRK08676  276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1198285465  92 QDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLIL-EVVCLS-WVNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK08676  355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
13-135 2.22e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 2.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  13 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGLA--FFHLLTHALFKALLFMCAGSmIHNLS 89
Cdd:PRK06277  267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTpLGIVagIFHAINHVIYKSALFLGAGI-VSYRT 345

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1198285465  90 DSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  346 KTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-130 3.62e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.56  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   2 FSPMLLTYNYGWFLLLVG--CMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKAL 76
Cdd:COG1007   257 LVEAFPGLAADWQLLLAVlaVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLG 336

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1198285465  77 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS**FNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   337 AFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-211 4.98e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.17  E-value: 4.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465   5 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-----YGLAFFHLLTHALFKALLFM 79
Cdd:PRK12664  194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFM 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285465  80 CAGSMIhNLSDSQDIRFMGSIVNfMPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYF--ISTGLT 157
Cdd:PRK12664  274 VADSVI-NRTRKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLF 351

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1198285465 158 ASYSFRLFYYSMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 211
Cdd:PRK12664  352 ASVGLKFFWYAFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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