NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1273810822|gb|ATQ39493|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B14_ko_11]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.60e-129

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 380.64  E-value: 3.60e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 241 ISNLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810822 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.60e-129

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 380.64  E-value: 3.60e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 241 ISNLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810822 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-241 9.17e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.47  E-value: 9.17e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 93
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  94 IRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGD 172
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822 173 NNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPIPISVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 2.75e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 142.30  E-value: 2.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 240 LISNLSISYNLISLSFlSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWY 319
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810822 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 14-241 1.64e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 144.35  E-value: 1.64e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  94 IRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 173
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810822 174 NFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPI-----------PISVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLL 517
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.60e-129

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 380.64  E-value: 3.60e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 241 ISNLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810822 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-336 2.00e-81

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 257.65  E-value: 2.00e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKF-LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLFSSPFFSMsLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 240 LISNlsisYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWY 319
Cdd:MTH00209  467 MVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQ 542

                         330
                  ....*....|....*..
gi 1273810822 320 DSNFKIYLVTFIFWMFI 336
Cdd:MTH00209  543 NNSLKLFVTFMMLILLG 559
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-308 1.59e-80

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 255.46  E-value: 1.59e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFG-FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLSSTYwFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810822 240 LISNLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFF 308
Cdd:MTH00207  471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMF 539
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-336 1.25e-79

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 252.84  E-value: 1.25e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIF-GFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLSSSsGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF 467

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 240 lisnLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWY 319
Cdd:MTH00151  468 ----GFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWP 543

                         330
                  ....*....|....*..
gi 1273810822 320 DSNFKIYLVTFIFWMFI 336
Cdd:MTH00151  544 VKWFNFFIGLILLLVLF 560
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-336 1.22e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 211.73  E-value: 1.22e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPM-LDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLfQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPI-PISVSLPYYLKFLTMIVVILGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLG 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 239 YLISNLSISYNLISLSflsiiSFIGSMWFMPFLSTKFISNFPLKLG-YISSKSFDYGWGELLGGQGLYSFFIYLIKYMQG 317
Cdd:MTH00211  496 LELVNLTHKQLKTSTL-----SFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTS 570

                         330
                  ....*....|....*....
gi 1273810822 318 WYDSNFKIYLVTFIFWMFI 336
Cdd:MTH00211  571 PQQGLIKSYLALLLLSLLL 589
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 16-336 2.51e-56

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 192.69  E-value: 2.51e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  16 LLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  96 FMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNF 175
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 176 YSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPIS-VSLPYYLKFLTMIVVILGSYLGYLISNLsiSYNLISLS 254
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTKTPpMTMPTTTKLAALIVTILGILLALELSNM--TTTLTPPK 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 255 FLSIISFIGSMWFMPFLSTKFISNFPLKLGY-ISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFKIYLVTFIFW 333
Cdd:MTH00004  515 QNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSFALT 594


                  ...
gi 1273810822 334 MFI 336
Cdd:MTH00004  595 ILL 597
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-336 8.54e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 191.72  E-value: 8.54e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFG-FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00208  288 RTSPLISNSPwFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPiSVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSF 526

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 240 LIsNLSISYNLISLSFLSIISFigsMWFMPFLSTKFISNFPLKLG-YISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGW 318
Cdd:MTH00208  527 SF-LLSLSSNPINSNFFSFLSN---QWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLT 602

                         330
                  ....*....|....*...
gi 1273810822 319 YDSNFKIYLVTFIFWMFI 336
Cdd:MTH00208  603 QTGYIKQYLLSSTLLFLL 620
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-332 1.80e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 184.73  E-value: 1.80e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  16 LLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  96 FMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNF 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 176 YSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPI-PISVSLPYYLKFLTMIVVILGSYLGYLISNLSISYNLISLS 254
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKM 514

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810822 255 FlsiiSFIGSMWFMPFLSTKFISNFPLKLGY-ISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFKIYLVTFIF 332
Cdd:MTH00066  515 H----SFSNLLAFFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-245 3.87e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 173.12  E-value: 3.87e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLL-VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00108  262 RFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00108  342 CSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPIS-VSLPYYLKFLTMIVVILGSYLG 238
Cdd:MTH00108  422 YSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILGFILA 501


                  ....*..
gi 1273810822 239 YLISNLS 245
Cdd:MTH00108  502 LELNLLT 508
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-241 9.17e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.47  E-value: 9.17e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 93
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  94 IRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGD 172
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822 173 NNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPIPISVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-169 1.40e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 161.15  E-value: 1.40e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  35 DLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVS 114
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810822 115 SLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRL-FYYSM 169
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 2.75e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 142.30  E-value: 2.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 240 LISNLSISYNLISLSFlSIISFIGSMWFMPFLSTKFISNFPLKLGYISSKSFDYGWGELLGGQGLYSFFIYLIKYMQGWY 319
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810822 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-313 4.07e-41

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 151.38  E-value: 4.07e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLL-LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00020  262 RSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFL 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00020  342 SAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAF 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 160 YSFRLFYYS-MSGDNNFYSSYSFDDSGYFISFGMIGLLII-AVFGGSLLSWIIFPIPISVS--LPYYLKFLTMIVVILGS 235
Cdd:MTH00020  422 YSIRLIYLTfLSNTNLKKAVFFHLHEGDWNLLLPLGILALgSIFVGYLAKEMIWSFQITLPpiVPLSIKLLPVFLSLGGI 501

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 236 YLGYLISNLSISYNLISLSFLSIIS--FIGSMWFMPFLSTKFISNFPLKLGY-ISSKSFDYGWGELLGGQGLYSFFIYLI 312
Cdd:MTH00020  502 GLVIILYFYSSKTFRVPFSFIGRNSytFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKGVLELVGPKGISNFLIILT 581


                  .
gi 1273810822 313 K 313
Cdd:MTH00020  582 Q 582
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 17-311 7.60e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 150.93  E-value: 7.60e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  97 MGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNFY 176
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 177 SS--YSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTMIVVILGSYLGYLISNLSISYNLIS-- 252
Cdd:MTH00210  440 KEvfIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKISrr 519

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810822 253 ----LSFLSIISFIGSMWFMPFLSTKFISNFPLKLGY-ISSKSFDYGWGELLGGQGLYSFFIYL 311
Cdd:MTH00210  520 gvsiRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRGLLEIIGPRGISKVLIKL 583
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 14-241 1.64e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 144.35  E-value: 1.64e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  94 IRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 173
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810822 174 NFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPI-----------PISVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-241 1.51e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 141.45  E-value: 1.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  94 IRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILElVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 173
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGKE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822 174 NfYSSYSFDDSGYFISFGMIGLLIIAVFGG-----SLLSWIIFP-----IPISVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:PRK06590  442 K-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-172 1.02e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 128.22  E-value: 1.02e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGF-GKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK07376  279 RMYPVFEQFPAvMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGSMIHNLKD--------SQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSwiNCLIFFLYF 151
Cdd:PRK07376  359 GSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGF 436

                         170       180
                  ....*....|....*....|.
gi 1273810822 152 ISTGLTAAYSFRLFYYSMSGD 172
Cdd:PRK07376  437 LTAGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-153 8.55e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 8.55e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810822  91 SQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFIS 153
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 17-194 8.82e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 108.06  E-value: 8.82e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL-------- 88
Cdd:CHL00025  296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  89 KDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILElvcLSWINCLIF-FLYFISTGLTAAYSFRLFYY 167
Cdd:CHL00025  376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                         170       180
                  ....*....|....*....|....*...
gi 1273810822 168 SMSGDNNFYS-SYSFDDSGYFISFGMIG 194
Cdd:CHL00025  453 TFEGHLRVHFqNYSGKKNSSFYSISLWG 480
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-304 2.46e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 100.80  E-value: 2.46e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  95 RFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCL----------------------------------- 139
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 140 -SWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPIPIS-- 216
Cdd:MTH00032  454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDILIGdi 533

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 217 --VSLPYYLKFLTMIVVILGSYLGYLISNLSISYNLI-------SLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGYIS 287
Cdd:MTH00032  534 ehPIVPPLIKVMPTLMGLFGMGLCLWAQKGTREGELYwgfdpigPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGHWG 613

                         330
                  ....*....|....*...
gi 1273810822 288 S-KSFDYGWGELLGGQGL 304
Cdd:MTH00032  614 IyKTLDRGWLELFGPQGI 631
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 3.04e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.37  E-value: 3.04e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  88 LKdSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIFFLYFISTGLTAAYSFRLFYY 167
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-285 3.73e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 91.13  E-value: 3.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 161 SFRLFyysMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFggsLLSWIIFPIPISVSLPYYLKFLTMIVVILgsyLGYL 240
Cdd:MTH00095  376 SYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF---MIML 446

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1273810822 241 ISNLSISYNLISLSFLSIISFIGSMWFMPFLSTKFISNFPLKLGY 285
Cdd:MTH00095  447 FSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGY 491
PRK12650 PRK12650
DUF4040 family protein;
1-164 4.35e-18

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 85.48  E-value: 4.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPML-DIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKAL 76
Cdd:PRK12650  260 RFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  77 LFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGL 156
Cdd:PRK12650  340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAAL 418

                         170
                  ....*....|..
gi 1273810822 157 TA----AYSFRL 164
Cdd:PRK12650  419 GAvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-167 9.00e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.78  E-value: 9.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  10 GFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  87 NLKdSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWINCLIFFLyfISTGLTAAYSFRLF 165
Cdd:PRK08375  349 TYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ..
gi 1273810822 166 YY 167
Cdd:PRK08375  426 YR 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-166 1.31e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 80.74  E-value: 1.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLV-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHL---LTHALFKAL 76
Cdd:PRK12644  255 RLAPGFADVPVWRPTVLVlGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAA 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  77 LFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWINCLIFFLYFI 152
Cdd:PRK12644  335 LFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVL 413

                         170
                  ....*....|....
gi 1273810822 153 STGLTAAYSFRLFY 166
Cdd:PRK12644  414 GSILTVAYSLRFLW 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 17-163 2.46e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 79.85  E-value: 2.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLA----FFHLLTHALFKALLFMCAGSMIHNlKDSQ 92
Cdd:PRK12648  276 GAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810822  93 DIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWINCLIFFLYFISTGLTAAYSFR 163
Cdd:PRK12648  354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-135 8.60e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 78.42  E-value: 8.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810822  92 QDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12646 PRK12646
DUF4040 family protein;
1-135 3.63e-15

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 76.33  E-value: 3.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGF-GKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG----------YSKL------- 62
Cdd:PRK12646  262 RFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaIASIyvfvlfa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810822  63 AFFHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-171 5.45e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 75.73  E-value: 5.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPmldIFGFGK----FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL-------------- 62
Cdd:PRK12645  262 RFTP---IFAGSQvwfwTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaai 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  63 --AFFHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE----- 135
Cdd:PRK12645  339 taAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlna 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1273810822 136 ----LVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:PRK12645  418 teanLFSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-166 9.13e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.01  E-value: 9.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGSMIHNLKd 90
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG-TQLglaaALFHIINHAIAKSLLFLASGVFIHAAG- 375

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810822  91 SQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLyFISTGLTAAYSFRLFY 166
Cdd:PRK12667  376 TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 13-166 1.10e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 74.95  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  13 KFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 92
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822  93 DIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSkdlILELVCLSWINCLIFFLYFISTGLTAAYS----FRLFY 166
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-210 1.89e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 73.98  E-value: 1.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   2 FSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---------------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  67 LLTHALFKALLFMCAGSMIHNLkDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLswINCLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810822 147 FFLYFISTGLTAAYSFRLFYYSMSGDNNfYSSYSFDDSGYFISFGMIgLLIIAVFGGSLLSWII 210
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFGPPS-EKVMNVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 10-164 6.05e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.49  E-value: 6.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  10 GFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08377  271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLFLAVGYVGI 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822  87 NLKDSQDIRFMGSVVNfMPLTSICFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWINCLIFFLYFISTGLTAAYSFRL 164
Cdd:PRK08377  351 TLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-135 1.42e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 71.40  E-value: 1.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  18 VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYSK---------LAFFHLLTHALFKALLFMCAGSMIHNL 88
Cdd:PRK12649  284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTTyhepglgvaAATFHLLNHATFKACLFLVAGIVAHEA 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810822  89 KdSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  362 A-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-230 3.30e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.90  E-value: 3.30e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   6 LDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysklAFFHlLTHALFKALLFMCAGSmI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYA-LAHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  86 HNLKDSQDIRFMGSVVNFMPLTsicfnVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIfflyFISTGLTAAYSFRLF 165
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLKNL-LPWQAIAL----NLAAVGTAASFWKFI 382

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 166 YYSMSGDN-------NFYSSYSFDDSGYFISFG------MIGLLI---IAVFGGSLLSWIIFPIpISVSLPYYLKFLTMI 229
Cdd:PRK07234  383 FLPFSADDedkkplpGFWNAIALLLGGLFLANGvyteayTLGNILkalLTIGLGWLPYFLVFRR-LILKLPRVLEQFEHL 461


                  .
gi 1273810822 230 V 230
Cdd:PRK07234  462 V 462
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 1.97e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 64.91  E-value: 1.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  12 GKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGYSKL----------------AFFHLLTHALFKA 75
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLAMVfiaygmpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810822  76 LLFMCAGSMIHNLKdSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLS 140
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-166 2.09e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 64.45  E-value: 2.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   8 IFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSKLAFFHLLTHALFKALLFMCAGSm 84
Cdd:PRK06589  276 IFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  85 IHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WINCLIFFLYFISTGLTAAYS 161
Cdd:PRK06589  355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434


                  ....*
gi 1273810822 162 FRLFY 166
Cdd:PRK06589  435 LKILS 439
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-134 4.73e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 63.76  E-value: 4.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  10 GFGKFLLLVGcMTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAG 82
Cdd:PRK12668  236 AFPGTELLIY-IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAG 313

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1273810822  83 SMIHNLKDSqDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  314 AVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 11-166 7.56e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.09  E-value: 7.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810822  88 LKDSQdIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIFFLYFISTGLTAAYSFRLFY 166
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 7.82e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 63.21  E-value: 7.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGL-----------------MMSILSMGYsklAFFHLLTHALF 73
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALGG---ALFHSLNHALF 345

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810822  74 KALLFMCAGSMIHNLKDsQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  346 KSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-253 9.25e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 62.59  E-value: 9.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00063  289 VGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLY 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822 161 SFRLFyysmsgdNNFYSSYSFDDSGYFISFGMIGLLiiaVFGGSLLSWIIFPI-PISVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00063  369 SFRLC-------LILFGVKSSLSSGVRFLFFNSGLM---VFLWLFINYYVFLLlDEVVYLGVFISLVLLLVQLLGLLVGV 438

                         250
                  ....*....|....*
gi 1273810822 240 LI-SNLSISYNLISL 253
Cdd:MTH00063  439 LFyDSNLFSNWSSSL 453
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-127 1.05e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.54  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  12 GKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLA--------------FFHLLTHALFKALL 77
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810822  78 FMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 11-134 1.32e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.22  E-value: 1.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--SKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810822  85 IHNLkDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-165 4.73e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.40  E-value: 4.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810822  88 LKdSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWIncLIFFLYFISTGLTAAYSFRLF 165
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWMY 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 1.00e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 56.50  E-value: 1.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  14 FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHnLKD 90
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810822  91 SQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-159 7.06e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 50.47  E-value: 7.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDIFGFGKFLLL-VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPARWLLVlVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  80 CAGS-----MIHNLKDSQDIRFMGSVVnFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINC--LIFFLYFI 152
Cdd:PRK08168  331 SASEavrdtRLRRLQGPQSAAGVVSLL-LAPLLSAALVLLLQSLLPLGAWPWWWSAVLALAWAPLLWQPCasGASTLSGL 409


                  ....*..
gi 1273810822 153 STGLTAA 159
Cdd:PRK08168  410 GLGLLLV 416
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 35-134 1.21e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.82  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  35 DLKKIIALSTLSQLG-LMMSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHNLKdSQDIRFMGSVVNFMPLTSICF 111
Cdd:PRK05846  300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                          90       100
                  ....*....|....*....|...
gi 1273810822 112 NVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK05846  379 LFFAMASLGLPGTSGFVGEFLIL 401
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 2.88e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.81  E-value: 2.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  10 GFGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSKlAFFHLLTHALFKALLFMCAGsMI 85
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LI 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810822  86 HNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 8-166 1.39e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   8 IFGFGKFLLLVGCMTMFMaglganfEFDLKKIIALSTLSQLGLMMSILSMGYSKLAF---FHLLTHALFKALLFMCAGsM 84
Cdd:PRK08676  276 LIGLGIFSIAVAAFSMLS-------QRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-I 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  85 IHNLKDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WINCLIFFLYFIstgltAAYSF 162
Cdd:PRK08676  348 LHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSF 422


                  ....
gi 1273810822 163 RLFY 166
Cdd:PRK08676  423 AIFL 426
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-130 1.74e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.27  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  11 FGKFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810822  88 LkDSQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 35-134 3.03e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.69  E-value: 3.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  35 DLKKIIALSTLSQLGLMMSILSMGySKLAFF----HLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSIC 110
Cdd:PRK06458  304 DIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                          90       100
                  ....*....|....*....|....
gi 1273810822 111 FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  382 LMLGALAIAGMPPFGVFISEFLIL 405
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-174 3.04e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  92 QDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE--LVCLSWINCLIFFLyfisTGLTAAYS-FRLFYYS 168
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgaLDNGAYILLALMLI----TSLITMYSlFRIFFLA 429


                  ....*.
gi 1273810822 169 MSGDNN 174
Cdd:PRK12663  430 YWGDKD 435
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 4.27e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.03  E-value: 4.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822   1 RFSPMLDiFGFGKFLLLVGCMTMFMAGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSPLFH-DDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ....
gi 1273810822  80 CAGS 83
Cdd:PRK08601  334 QSGS 337
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 13-137 5.57e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 41.35  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  13 KFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFFHLLTHALFKALLFMcagsMIHNLKdSQ 92
Cdd:MTH00112  152 TLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TK 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1273810822  93 DIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLIL-ELV 137
Cdd:MTH00112  226 TLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
15-135 1.50e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--YSKLA-FFHLLTHALFKALLFMCAGSmIHNLKDS 91
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810822  92 QDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-130 1.87e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 39.71  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810822  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL----SMGYSkLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVS-AALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1273810822  91 SQDIRFMGSVVNFMPLTSICFNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH