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Conserved domains on  [gi|1273810914|gb|ATQ39539|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B68_ho_28]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-335 2.07e-127

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 376.02  E-value: 2.07e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCA 80
Cdd:MTH00165  233 FNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCA 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  81 GSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYS 160
Cdd:MTH00165  313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 161 FRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:MTH00165  393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 241 SNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDS 320
Cdd:MTH00165  473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNN 552

                         330
                  ....*....|....*
gi 1273810914 321 NFSIYLLTFIFWMFI 335
Cdd:MTH00165  553 NLKIYLLSFLLWMII 567
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-335 2.07e-127

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 376.02  E-value: 2.07e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCA 80
Cdd:MTH00165  233 FNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCA 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  81 GSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYS 160
Cdd:MTH00165  313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 161 FRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:MTH00165  393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 241 SNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDS 320
Cdd:MTH00165  473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNN 552

                         330
                  ....*....|....*
gi 1273810914 321 NFSIYLLTFIFWMFI 335
Cdd:MTH00165  553 NLKIYLLSFLLWMII 567
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-240 5.97e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.47  E-value: 5.97e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 92
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGD 171
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810914 172 NNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWI---------IFPIPFMVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 159-335 4.52e-39

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 136.53  E-value: 4.52e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 159 YSFRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGY 238
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 239 LISNLKISYILMSLNiMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWY 318
Cdd:pfam06455  81 ELSNLSNKQLKKSLN-FNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810914 319 DSNFSIYLLTFIFWMFI 335
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 13-291 7.79e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 139.34  E-value: 7.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 92
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDN 172
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 173 NFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPI-----------PFMVSLPYYLKFLTIIVVALGSYLGYLIS 241
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLLY 518

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1273810914 242 NLKISYILMSLNIMSFV-SFIGSMWLMPFLSTNFISYFPLKLGYISSKSLD 291
Cdd:TIGR01974 519 LGNPTLPAKIAQRHSGLyRLLLNKWYFDELYDKVFVKPYLFLGKLLWKDPD 569
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-335 2.07e-127

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 376.02  E-value: 2.07e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCA 80
Cdd:MTH00165  233 FNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCA 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  81 GSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYS 160
Cdd:MTH00165  313 GSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYS 392

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 161 FRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:MTH00165  393 FRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 241 SNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDS 320
Cdd:MTH00165  473 SLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNN 552

                         330
                  ....*....|....*
gi 1273810914 321 NFSIYLLTFIFWMFI 335
Cdd:MTH00165  553 NLKIYLLSFLLWMII 567
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-335 1.25e-79

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 252.84  E-value: 1.25e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAF-GFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 79
Cdd:MTH00151  229 FFPFLSSSsGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLC 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  80 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAY 159
Cdd:MTH00151  309 AGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALY 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 160 SFRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYL 239
Cdd:MTH00151  389 SARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFG 468

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 240 ISNLKisYILMSLNIMSFvsFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYD 319
Cdd:MTH00151  469 FWDSG--FSSSKMVKLSF--FFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPV 544

                         330
                  ....*....|....*.
gi 1273810914 320 SNFSIYLLTFIFWMFI 335
Cdd:MTH00151  545 KWFNFFIGLILLLVLF 560
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-307 3.49e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 249.30  E-value: 3.49e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFG-FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 79
Cdd:MTH00207  232 FYPFLSSTYwFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  80 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAY 159
Cdd:MTH00207  312 AGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 160 SFRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYL 239
Cdd:MTH00207  392 STRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWL 471

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810914 240 ISNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFF 307
Cdd:MTH00207  472 FTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMF 539
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 10-335 4.98e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 248.79  E-value: 4.98e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKD 89
Cdd:MTH00209  238 FSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGH 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  90 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMS 169
Cdd:MTH00209  318 SQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLW 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 170 GDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGYLISNlkisYIL 249
Cdd:MTH00209  398 GPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLK----KNF 473

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 250 MSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFSIYLLTF 329
Cdd:MTH00209  474 FLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFM 553


                  ....*.
gi 1273810914 330 IFWMFI 335
Cdd:MTH00209  554 MLILLG 559
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 4-335 2.52e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 205.57  E-value: 2.52e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   4 MLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSM 83
Cdd:MTH00211  261 FQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSI 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  84 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRL 163
Cdd:MTH00211  341 IHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRL 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 164 FYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMV-SLPYYLKFLTIIVVALGSYLGYLISN 242
Cdd:MTH00211  421 IFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLGLELVN 500

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 243 LKISYILMSLnimsfVSFIGSMWLMPFLSTNFISYFPLKLG-YISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSN 321
Cdd:MTH00211  501 LTHKQLKTST-----LSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGL 575

                         330
                  ....*....|....
gi 1273810914 322 FSIYLLTFIFWMFI 335
Cdd:MTH00211  576 IKSYLALLLLSLLL 589
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 15-335 9.19e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 191.34  E-value: 9.19e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  15 LVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 94
Cdd:MTH00208  304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  95 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDNNF 174
Cdd:MTH00208  384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 175 YSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVsLPYYLKFLTIIVVALGSYLGYLIsnlkISYILMSLNI 254
Cdd:MTH00208  464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLT-LPLILKSLPLIVTIIGAAFSFSF----LLSLSSNPIN 538

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 255 MSFVSFIGSMWLMPFLSTNFISYFPLKLG-YISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFSIYLLTFIFWM 333
Cdd:MTH00208  539 SNFFSFLSNQWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTLLF 618


                  ..
gi 1273810914 334 FI 335
Cdd:MTH00208  619 LL 620
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 15-335 9.19e-54

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 185.75  E-value: 9.19e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  15 LVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 94
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  95 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDNNF 174
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 175 YSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPI-PFMVSLPYYLKFLTIIVVALGSYLGYLISNLKISYILMSLN 253
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALELSNMTTTLTPPKQN 516

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 254 IMSfvSFIGSMWLMPFLSTNFISYFPLKLGY-ISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFSIYLLTFIFW 332
Cdd:MTH00004  517 TLH--NFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSFALT 594


                  ...
gi 1273810914 333 MFI 335
Cdd:MTH00004  595 ILL 597
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 15-331 1.49e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 174.33  E-value: 1.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  15 LVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 94
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  95 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDNNF 174
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 175 YSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPI-PFMVSLPYYLKFLTIIVVALGSYLGYLISNLKiSYILMSLN 253
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKIT-SKTTPKTK 513

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810914 254 IMSFVSFIGsmwLMPFLSTNFISYFPLKLGY-ISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFSIYLLTFIF 331
Cdd:MTH00066  514 MHSFSNLLA---FFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 21-243 5.15e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 170.03  E-value: 5.15e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  21 TMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIV 100
Cdd:MTH00108  285 TLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 101 NFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDNNFYSSFSF 180
Cdd:MTH00108  364 KTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITI 443

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810914 181 DDKGYFISFGMIGLLVVAVFGGSLLSWIIFP--IPFMvSLPYYLKFLTIIVVALGSYLGYLISNL 243
Cdd:MTH00108  444 NENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILGFILALELNLL 507
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 34-168 2.82e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 160.00  E-value: 2.82e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  34 DLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVS 113
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810914 114 SLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRL-FYYSM 168
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-240 5.97e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.47  E-value: 5.97e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 92
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGD 171
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810914 172 NNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWI---------IFPIPFMVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 16-312 3.24e-40

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 149.07  E-value: 3.24e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  16 VVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 95
Cdd:MTH00020  279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  96 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYS-MSGDNNF 174
Cdd:MTH00020  359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTfLSNTNLK 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 175 YSSFSFDDKGYFISFGMIGLLVV-AVFGGSLLSWII--FPIPFMVSLPYYLKFLTIIVVALGSYLGYLISNLKISYILMS 251
Cdd:MTH00020  439 KAVFFHLHEGDWNLLLPLGILALgSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSLGGIGLVIILYFYSSKTFRVP 518

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810914 252 LNIMSFVS--FIGSMWLMPFLSTNFISYFPLKLGY-ISSKSLDYGWGELLGGQGLYSFFIYLIK 312
Cdd:MTH00020  519 FSFIGRNSytFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKGVLELVGPKGISNFLIILTQ 582
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 16-331 2.96e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 146.31  E-value: 2.96e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  16 VVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 95
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  96 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDNNFY 175
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 176 SS--FSFDDKGYFISFGMIGLLVVAVFGGSL-----LSWIIFPIpfmvsLPYYLKFLTIIVVALGSYLGYLISNLKISYI 248
Cdd:MTH00210  440 KEvfIGVHESSWNITFPLLLLAFGSIFVGYLgkevvLSNVIPPI-----VPNSIKMIPLLFSLLGALLAFVIYNSMVFLI 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 249 ------LMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGY-ISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSN 321
Cdd:MTH00210  515 kisrrgVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRGLLEIIGPRGISKVLIKLTQKISNLQSGM 594

                         330
                  ....*....|
gi 1273810914 322 FSIYLLTFIF 331
Cdd:MTH00210  595 VFNYALIMII 604
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 159-335 4.52e-39

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 136.53  E-value: 4.52e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 159 YSFRLFYYSMSGDNNFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPIPFMVSLPYYLKFLTIIVVALGSYLGY 238
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 239 LISNLKISYILMSLNiMSFVSFIGSMWLMPFLSTNFISYFPLKLGYISSKSLDYGWGELLGGQGLYSFFIYLIKYMQGWY 318
Cdd:pfam06455  81 ELSNLSNKQLKKSLN-FNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810914 319 DSNFSIYLLTFIFWMFI 335
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 13-291 7.79e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 139.34  E-value: 7.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 92
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDN 172
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 173 NFYSSFSFDDKGYFISFGMIGLLVVAVFGGSLLSWIIFPI-----------PFMVSLPYYLKFLTIIVVALGSYLGYLIS 241
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLLY 518

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1273810914 242 NLKISYILMSLNIMSFV-SFIGSMWLMPFLSTNFISYFPLKLGYISSKSLD 291
Cdd:TIGR01974 519 LGNPTLPAKIAQRHSGLyRLLLNKWYFDELYDKVFVKPYLFLGKLLWKDPD 569
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 13-240 1.45e-36

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 138.75  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 92
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWINCLIFFLYFVSTGLTAAYSFRLFYYSMSGDN 172
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGKE 441

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 173 nfyssfsfDDKGY-------FISFGMIGLLVVAVFGG-----SLLSWIIFP-----IPFMVSLPYYLKFLTIIVVALGSY 235
Cdd:PRK06590  442 --------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIA 513


                  ....*
gi 1273810914 236 LGYLI 240
Cdd:PRK06590  514 LAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
13-171 4.08e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 126.29  E-value: 4.08e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKD--- 89
Cdd:PRK07376  293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  90 -----SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwiNCLIFFLYFVSTGLTAAYSFRLF 164
Cdd:PRK07376  373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                  ....*..
gi 1273810914 165 YYSMSGD 171
Cdd:PRK07376  451 FLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 13-152 1.25e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 1.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 89
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810914  90 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVS 152
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 17-193 8.78e-25

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 104.97  E-value: 8.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  17 VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL--------K 88
Cdd:CHL00025  297 IGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspD 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  89 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWINCLIF-FLYFVSTGLTAAYSFRLFYYS 167
Cdd:CHL00025  377 KSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFRIYLLT 453

                         170       180
                  ....*....|....*....|....*..
gi 1273810914 168 MSGDNNFYS-SFSFDDKGYFISFGMIG 193
Cdd:CHL00025  454 FEGHLRVHFqNYSGKKNSSFYSISLWG 480
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 16-335 9.08e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 105.04  E-value: 9.08e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  16 VVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 93
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  94 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCL----------------------------------- 138
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 139 -SWINCLIFFLYFVSTGLTAAYSFRLFYYSM------SGDNNFYSSFSFDDKGYFISFGMigLLVVAVFGGSLLSWIIF- 210
Cdd:MTH00032  454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFiispnsPKESLISSHINIVDKRVLTVLSL--LCFGAIFVGYLIQDILIg 531

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 211 ----PI--PFMVSLPYYLKFLTIIVVALGSYLGYLISNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGY 284
Cdd:MTH00032  532 diehPIvpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGH 611

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1273810914 285 ISS-KSLDYGWGELLGGQGLYSFFIYLIKYMQGWYDSNFSIYLLTFIFWMFI 335
Cdd:MTH00032  612 WGIyKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLLSFTII 663
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-166 1.84e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 97.14  E-value: 1.84e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLF 77
Cdd:COG0651   262 LFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLF 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  78 MCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIFFLYFVSTGLTA 157
Cdd:COG0651   342 LAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTL 419


                  ....*....
gi 1273810914 158 AYSFRLFYY 166
Cdd:COG0651   420 AYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-334 1.01e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 92.67  E-value: 1.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCA 80
Cdd:MTH00095  217 FSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQV 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  81 GSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYS 160
Cdd:MTH00095  297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 161 FRLFYysmsgdnNFYSSFSFDDKGYFISFGMIGLLVVAVFGG-SLLSWIIFPIPFMVSLPYYLKFLTIIVVALgsyLGYL 239
Cdd:MTH00095  377 YRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLYLDFYVPLFYLF---MIML 446

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914 240 ISNLKISYILMSLNIMSFVSFIGSMWLMPFLSTNFISYFPLKLGYIssksldygwgellgGQGLYSFFIYLIKYMQGWYD 319
Cdd:MTH00095  447 FSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK--------------GFNFFSSFSFFFFSYMKSFK 512

                         330
                  ....*....|....*
gi 1273810914 320 SNFSIYLLTFIFWMF 334
Cdd:MTH00095  513 YNSLLILLFLIFLFL 527
PRK12650 PRK12650
DUF4040 family protein;
14-163 5.11e-18

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 85.09  E-value: 5.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 90
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDHQ-AGT 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810914  91 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTA----AYSFRL 163
Cdd:PRK12650  354 RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-166 5.47e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.55  E-value: 5.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   9 GFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIH 85
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  86 NLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWINCLIFFLyfVSTGLTAAYSFRLF 164
Cdd:PRK08375  349 TYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ..
gi 1273810914 165 YY 166
Cdd:PRK08375  426 YR 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-162 9.15e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 81.39  E-value: 9.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLV--VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLA----FFHLLTHALFKALLFMCAGSMIHN 86
Cdd:PRK12648  271 FWIVggAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  87 lKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWINCLIFFLYFVSTGLTAAYSFR 162
Cdd:PRK12648  350 -TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-165 3.42e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 79.58  E-value: 3.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHL---LTHALFKALLFMCAGSMIHNlKDS 90
Cdd:PRK12644  270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810914  91 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWINCLIFFLYFVSTGLTAAYSFRLFY 165
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-134 1.02e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 78.04  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 90
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810914  91 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-165 7.86e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.01  E-value: 7.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGSMIHNLKd 89
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG-TQLglaaALFHIINHAIAKSLLFLASGVFIHAAG- 375

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810914  90 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLyFVSTGLTAAYSFRLFY 165
Cdd:PRK12667  376 TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 12-165 8.60e-15

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 74.95  E-value: 8.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  12 KFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 91
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810914  92 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWINCLIFFLYFVSTGLTAAYS----FRLFY 165
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 16-170 9.13e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 75.35  E-value: 9.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  16 VVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL----------------AFFHLLTHALFKALLFMC 79
Cdd:PRK12645  279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMI 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  80 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE---------LVCLSWINCLIFFLYF 150
Cdd:PRK12645  359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFPVIAW 437

                         170       180
                  ....*....|....*....|
gi 1273810914 151 VSTGLTAAYSFRLFYYSMSG 170
Cdd:PRK12645  438 VASVFTFVYSIIFIFKTFFG 457
PRK12646 PRK12646
DUF4040 family protein;
17-134 2.60e-14

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 73.64  E-value: 2.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  17 VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG----------YSKL-------AFFHLLTHALFKALLFMC 79
Cdd:PRK12646  280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaIASIyvfvlfaALFHLMNHAIFKCALFMG 359

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1273810914  80 AGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK12646  360 VGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 4-163 7.80e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.11  E-value: 7.80e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   4 MLDAFGFG---KFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLF 77
Cdd:PRK08377  263 MQNANGWSsvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLF 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  78 MCAGSMIHNLKDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWINCLIFFLYFVSTGLTA 157
Cdd:PRK08377  343 LAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEA 420


                  ....*.
gi 1273810914 158 AYSFRL 163
Cdd:PRK08377  421 VYYFRL 426
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-134 1.30e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 71.78  E-value: 1.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLV--VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYSK---------LAFFHLLTHALFKALLFMCAG 81
Cdd:PRK12649  278 FILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTTyhepglgvaAATFHLLNHATFKACLFLVAG 355

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1273810914  82 SMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK12649  356 IVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-209 1.42e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 71.28  E-value: 1.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---------------AFFH 65
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  66 LLTHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswINCLI 145
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810914 146 FFLYFVSTGLTAAYSFRLFYYSMSGDNNfYSSFSFDDKGYFISFGMIgLLVVAVFGGSLLSWII 209
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFGPPS-EKVMNVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 11-139 6.20e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 66.45  E-value: 6.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  11 GKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGYSKL----------------AFFHLLTHALFKA 74
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLAMVfiaygmpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810914  75 LLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 139
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-165 1.08e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.61  E-value: 1.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   8 FGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSKLAFFHLLTHALFKALLFMCAGSmI 84
Cdd:PRK06589  277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-I 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  85 HNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WINCLIFFLYFVSTGLTAAYSF 161
Cdd:PRK06589  356 YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLL 435


                  ....
gi 1273810914 162 RLFY 165
Cdd:PRK06589  436 KILS 439
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-134 1.33e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.97  E-value: 1.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   5 LDAFGFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysklAFFHlLTHALFKALLFMCAGSmI 84
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYA-LAHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810914  85 HNLKDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 10-165 3.99e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.86  E-value: 3.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHN 86
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810914  87 LKDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGlTAAYSFRLFY 165
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIG-SFLYVFRPLA 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 10-134 4.39e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 63.98  E-value: 4.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGL-----------------MMSILSMGYsklAFFHLLTHALF 72
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALGG---ALFHSLNHALF 345

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810914  73 KALLFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK08667  346 KSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 11-126 7.34e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.92  E-value: 7.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  11 GKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLA--------------FFHLLTHALFKALL 76
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810914  77 FMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 126
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
23-133 1.11e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 62.60  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  23 FMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGSMIHNLKDSqDIRF 95
Cdd:PRK12668  249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTE 326

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1273810914  96 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 133
Cdd:PRK12668  327 LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 13-240 3.54e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 61.05  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 92
Cdd:MTH00063  222 FFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQS 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  93 IR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFVSTGLTAAYSFRLFyys 167
Cdd:MTH00063  302 SNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLC--- 373

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810914 168 msgdNNFYSSFSFDDKGYFISFGMIGLLvvaVFGGSLLSWIIFPIPF-MVSLPYYLKFLTIIVVALGSYLGYLI 240
Cdd:MTH00063  374 ----LILFGVKSSLSSGVRFLFFNSGLM---VFLWLFINYYVFLLLDeVVYLGVFISLVLLLVQLLGLLVGVLF 440
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 10-133 5.62e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.99  E-value: 5.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--SKLAF----FHLLTHALFKALLFMCAGSM 83
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810914  84 IHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 133
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 10-164 2.37e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.17  E-value: 2.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 86
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810914  87 LKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWIncLIFFLYFVSTGLTAAYSFRLF 164
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWMY 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-134 3.84e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 57.65  E-value: 3.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  13 FLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHnLKD 89
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810914  90 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 10-133 7.43e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.59  E-value: 7.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 86
Cdd:PRK05846  276 FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDR 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810914  87 LKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 133
Cdd:PRK05846  356 LH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-134 9.36e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 50.35  E-value: 9.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   9 GFGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSKlAFFHLLTHALFKALLFMCAGsMI 84
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LI 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810914  85 HNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-82 2.80e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 48.93  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAFGFGKFLLV-VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 79
Cdd:PRK08168  252 FAPLLEQAPPARWLLVlVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLS 331


                  ...
gi 1273810914  80 AGS 82
Cdd:PRK08168  332 ASE 334
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 11-133 5.13e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.00  E-value: 5.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  11 GKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFF----HLLTHALFKALLFMCAGSMIHN 86
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810914  87 lKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 133
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-129 6.71e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 6.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSKL--AFFHLLTHALFKALLFMCAGSMIHN 86
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810914  87 LkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 129
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 10-165 1.28e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 1.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  10 FGKFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAF---FHLLTHALFKALLFMCAGsMIHN 86
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  87 LKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WINCLIFFLYFVstgltAAYSFRLF 164
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSFAIF 425


                  .
gi 1273810914 165 Y 165
Cdd:PRK08676  426 L 426
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
14-133 1.86e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 1.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 90
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810914  91 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 133
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-82 3.09e-04

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 42.33  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914   1 FSPMLDAfGFGKFLLVVGCMTMFMAGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 79
Cdd:PRK08601  256 FSPLFHD-DIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQ 334


                  ...
gi 1273810914  80 AGS 82
Cdd:PRK08601  335 SGS 337
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
14-134 6.98e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 6.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--YSKLA-FFHLLTHALFKALLFMCAGSmIHNLKDS 90
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810914  91 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 134
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-129 7.43e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 41.26  E-value: 7.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  14 LLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL----SMGYSkLAFFHLLTHALFKALLFMCAGSMIHNLKD 89
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVS-AALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1273810914  90 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 129
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 12-136 1.06e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 40.58  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810914  12 KFLLVVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFFHLLTHALFKALLFMcagsMIHNLKdSQ 91
Cdd:MTH00112  152 TLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TK 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1273810914  92 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 136
Cdd:MTH00112  226 TLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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